Package: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-4)

[ Source: ngmlr  ]

CoNvex Gap-cost alignMents for Long Reads

Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.

Other Packages Related to ngmlr

• dep: libc6 (>= 2.38)

  GNU C-bibliotek: Delte biblioteker
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [not armhf, i386, riscv64]

  GCC støttebibliotek

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 13.1)

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• dep: zlib1g (>= 1:1.1.4) [not armhf]

  Komprimeringsbibliotek - kørselstid

  dep: zlib1g (>= 1:1.2.3.4) [armhf]

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Architecture	Package Size	Installed Size	Files
amd64	664.0 kB	1,113.0 kB	[list of files]
arm64	647.7 kB	1,109.0 kB	[list of files]
armhf	637.2 kB	980.0 kB	[list of files]
i386	670.8 kB	1,140.0 kB	[list of files]
ppc64el	668.4 kB	1,237.0 kB	[list of files]
riscv64	655.4 kB	1,017.0 kB	[list of files]
s390x	662.6 kB	1,137.0 kB	[list of files]