[ Source: seqtools ]
Package: dotter (4.44.1+dfsg-7.1 and others)
Links for dotter
Debian Resources:
Download Source Package seqtools:
- [seqtools_4.44.1+dfsg-7.1.dsc]
- [seqtools_4.44.1+dfsg.orig.tar.xz]
- [seqtools_4.44.1+dfsg-7.1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [www.sanger.ac.uk]
Similar packages:
detailed comparison of two genomic sequences
Dotter is a graphical dot-matrix program for detailed comparison of two sequences.
* Every residue in one sequence is compared to every residue in the other, and a matrix of scores is calculated. * One sequence is plotted on the x-axis and the other on the y-axis. * Noise is filtered out so that alignments appear as diagonal lines. * Pairwise scores are averaged over a sliding window to make the score matrix more intelligible. * The averaged score matrix forms a three-dimensional landscape, with the two sequences in two dimensions and the height of the peaks in the third. This landscape is projected onto two dimensions using a grey-scale image - the darker grey of a peak, the higher the score is. * The contrast and threshold of the grey-scale image can be adjusted interactively, without having to recalculate the score matrix. * An Alignment Tool is provided to examine the sequence alignment that the grey-scale image represents. * Known high-scoring pairs can be loaded from a GFF file and overlaid onto the plot. * Gene models can be loaded from GFF and displayed alongside the relevant axis. * Compare a sequence against itself to find internal repeats. * Find overlaps between multiple sequences by making a dot-plot of all sequences versus themselves. * Run Dotter in batch mode to create large, time-consuming dot-plots as a background process.
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Download dotter
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
alpha (unofficial port) | 4.44.1+dfsg-7.1 | 591.6 kB | 840.0 kB | [list of files] |
amd64 | 4.44.1+dfsg-7.1+b1 | 596.6 kB | 805.0 kB | [list of files] |
arm64 | 4.44.1+dfsg-7.1+b1 | 584.3 kB | 837.0 kB | [list of files] |
armel | 4.44.1+dfsg-7.1+b1 | 576.7 kB | 759.0 kB | [list of files] |
armhf | 4.44.1+dfsg-7.1+b1 | 577.8 kB | 699.0 kB | [list of files] |
hppa (unofficial port) | 4.44.1+dfsg-7.1 | 593.3 kB | 795.0 kB | [list of files] |
i386 | 4.44.1+dfsg-7.1+b1 | 604.0 kB | 835.0 kB | [list of files] |
ia64 (unofficial port) | 4.44.1+dfsg-7.1 | 621.8 kB | 1,052.0 kB | [list of files] |
m68k (unofficial port) | 4.44.1+dfsg-7.1 | 592.5 kB | 810.0 kB | [list of files] |
mips64el | 4.44.1+dfsg-7.1+b1 | 597.7 kB | 924.0 kB | [list of files] |
ppc64 (unofficial port) | 4.44.1+dfsg-7.1 | 602.2 kB | 964.0 kB | [list of files] |
ppc64el | 4.44.1+dfsg-7.1+b1 | 602.2 kB | 901.0 kB | [list of files] |
riscv64 | 4.44.1+dfsg-7.1+b1 | 595.1 kB | 757.0 kB | [list of files] |
s390x | 4.44.1+dfsg-7.1+b1 | 592.8 kB | 825.0 kB | [list of files] |
sh4 (unofficial port) | 4.44.1+dfsg-7.1 | 607.6 kB | 836.0 kB | [list of files] |
sparc64 (unofficial port) | 4.44.1+dfsg-7.1 | 580.2 kB | 1,554.0 kB | [list of files] |
x32 (unofficial port) | 4.44.1+dfsg-7.1 | 596.7 kB | 786.0 kB | [list of files] |