Package: libjellyfish-2.0-2 (2.3.1-2 and others) [debports]
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count k-mers in DNA sequences (dynamic library of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the dynamic library the main executable of jellyfish is linked to.
Other Packages Related to libjellyfish-2.0-2
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- dep: libc6 (>= 2.34)
- Knihovna GNU C: Sdílené knihovny
also a virtual package provided by libc6-udeb
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- dep: libgcc-s4 (>= 4.1.1)
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- dep: libstdc++6 (>= 13.1)
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Download libjellyfish-2.0-2
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
hppa (unofficial port) | 2.3.1-2+b1 | 66.9 kB | 208.0 kB | [list of files] |