Package: tabix (1.22.1+ds2-1 and others)

[ Source: htslib  ]

generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.

Tags: Implemented in: C, Role: Program, Science: science::calculation, use::calculating, Supports Format: HTML, Hypertext Markup Language, Works with: Text

Other Packages Related to tabix

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libdeflate0 (>= 1.0)

  fast, whole-buffer DEFLATE-based compression and decompression

• dep: libhtscodecs2 (>= 1.3.0)

  Custom compression for CRAM and others

• dep: liblzma5 (>= 5.1.1alpha+20120614)

  XZ-format compression library

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download tabix

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.22.1+ds2-1+b1	497.6 kB	2,372.0 kB	[list of files]
arm64	1.22.1+ds2-1+b1	454.5 kB	2,320.0 kB	[list of files]
armhf	1.22.1+ds2-1+b1	425.5 kB	1,677.0 kB	[list of files]
i386	1.22.1+ds2-1+b1	538.5 kB	2,657.0 kB	[list of files]
ppc64el	1.22.1+ds2-1+b1	530.0 kB	3,152.0 kB	[list of files]
riscv64	1.22.1+ds2-1+b1	503.2 kB	1,900.0 kB	[list of files]
s390x	1.22.1+ds2-1+b1	482.5 kB	2,524.0 kB	[list of files]