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[ Source: tree-puzzle  ]

Package: tree-puzzle (5.2-10)

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Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Architecture Package Size Installed Size Files
amd64 133.7 kB308.0 kB [list of files]
arm64 116.8 kB280.0 kB [list of files]
armel 132.3 kB348.0 kB [list of files]
armhf 124.9 kB252.0 kB [list of files]
i386 134.3 kB328.0 kB [list of files]
mips 131.8 kB352.0 kB [list of files]
mips64el 133.3 kB367.0 kB [list of files]
mipsel 133.3 kB352.0 kB [list of files]
ppc64el 129.3 kB361.0 kB [list of files]
s390x 131.2 kB364.0 kB [list of files]