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[ Source: t-coffee  ]

Package: t-coffee (12.00.7fb08c2-4)

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 1,484.5 kB7,409.0 kB [list of files]
arm64 1,384.2 kB7,313.0 kB [list of files]
armel 1,326.1 kB7,200.0 kB [list of files]
armhf 1,352.9 kB6,604.0 kB [list of files]
i386 1,514.6 kB7,761.0 kB [list of files]
mips 1,416.0 kB7,954.0 kB [list of files]
mips64el 1,445.1 kB8,067.0 kB [list of files]
mipsel 1,430.4 kB7,954.0 kB [list of files]
ppc64el 1,548.2 kB8,101.0 kB [list of files]
s390x 1,404.7 kB7,713.0 kB [list of files]