Package: predictprotein (1.1.08-1)

[ Source: predictprotein  ]

suite of protein sequence analysis tools

PredictProtein is a sequence analysis suite providing prediction of protein structure and function.

PredictProtein takes a protein sequence as input and provides the following per-residue, or whole protein annotations:

 * secondary structure
 * solvent accessibility
 * multiple sequence alignments
 * PROSITE sequence motifs
 * low-complexity regions
 * nuclear localisation signals
 * regions lacking regular structure (NORS)
 * unstructured loops
 * transmembrane helices
 * transmembrane beta barrels
 * coiled-coil regions
 * disulfide-bonds
 * disordered regions
 * B-value flexibility
 * protein-protein interaction sites
 * Gene Ontology terms

Other Packages Related to predictprotein

• dep: bioperl

  Perl tools for computational molecular biology

• dep: blast2

  transitional dummy package to ncbi-blast+-legacy

• dep: disulfinder

  cysteines disulfide bonding state and connectivity predictor

• dep: hmmer

  profile hidden Markov models for protein sequence analysis

• dep: hmmer2

  profile hidden Markov models for protein sequence analysis

• dep: librg-exception-perl

  RG::Exception Perl module

• dep: librg-utils-perl

  parsers and format conversion utilities used by (e.g.) profphd

• dep: make

  utility for directing compilation

• dep: metastudent

  predictor of Gene Ontology terms from protein sequence

• dep: ncbi-seg

  tool to mask segments of low compositional complexity in amino acid sequences

• dep: ncoils

  coiled coil secondary structure prediction

• dep: norsnet

  tool to identify unstructured loops in proteins

• dep: norsp

  predictor of non-regular secondary structure

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: predictnls

  prediction and analysis of protein nuclear localization signals

• dep: profbval

  predictor of flexible/rigid protein residues from sequence

• dep: profisis

  prediction of protein-protein interaction sites from sequence

• dep: profphd

  secondary structure and solvent accessibility predictor

• dep: proftmb

  per-residue prediction of bacterial transmembrane beta barrels

• dep: reprof

  protein secondary structure and accessibility predictor

• sug: pp-cache-mgr (>= 1.0.3)

  Package not available

• sug: pp-popularity-contest

  PredictProtein popularity contest

• sug: predictprotein-nonfree

  Package not available

Download predictprotein

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	57.5 kB	171.0 kB	[list of files]