all options
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: alien-hunter  ]

Package: alien-hunter (1.7-7)

Links for alien-hunter

Screenshot

Debian Resources:

Download Source Package alien-hunter:

Maintainers:

External Resources:

Similar packages:

Interpolated Variable Order Motifs to identify horizontally acquired DNA

Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into Artemis genome viewer freely available at: http://www.sanger.ac.uk/Software/Artemis/.

Tags: Field: Biology, Structural Biology, Implemented in: implemented-in::java, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Analysing

Other Packages Related to alien-hunter

  • depends
  • recommends
  • suggests
  • enhances

Download alien-hunter

Download for all available architectures
Architecture Package Size Installed Size Files
all 28.1 kB91.0 kB [list of files]