Software Packages in "buster", Subsection science

abacas (1.3.1-4)
Algorithm Based Automatic Contiguation of Assembled Sequences
abyss (2.1.0-1)
de novo, parallel, sequence assembler for short reads
acedb-other (4.9.39+dfsg.02-3)
retrieval of DNA or protein sequences
acedb-other-belvu (4.9.39+dfsg.02-3)
transitional package for belvu
acedb-other-belvu
virtual package provided by belvu
acedb-other-dotter (4.9.39+dfsg.02-3)
transitional package for dotter
acedb-other-dotter
virtual package provided by dotter
aces3 (3.0.8-5.1+b4 [mips64el], 3.0.8-5.1+b3 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Advanced Concepts in Electronic Structure III
aces3-data (3.0.8-5.1)
Advanced Concepts in Electronic Structure III
achilles (2-9)
Artificial life and evolution simulator
adapterremoval (2.2.2-1)
rapid adapter trimming, identification, and read merging of gene sequences
adapterremoval-examples (2.2.2-1)
rapid adapter trimming, identification, and read merging (example data)
adun-core (0.81-11+b1)
Molecular Simulator
aegean (0.15.2+dfsg-2)
integrated genome analysis toolkit
aeskulap (0.2.2b1+git20161206-4)
medical image viewer and DICOM network client
aevol (5.0-1)
digital genetics model to run Evolution Experiments in silico
aghermann (1.1.2-1+b2 [mips64el], 1.1.2-1+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Sleep-research experiment manager
aladin (10.076+dfsg-1)
Interactive sky atlas for astronomical images and datasets
alfa (1.0-2+b2 [mips64el], 1.0-2+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Automated Line Fitting Algorithm
algotutor (0.8.6-2)
program for observing the intermediate steps of algorithm
alien-hunter (1.7-6)
Interpolated Variable Order Motifs to identify horizontally acquired DNA
altree (1.3.1-7)
program to perform phylogeny-based association and localization analysis
altree-examples (1.3.1-7)
example files for ALTree
amap-align (2.2+git20080214.600fc29+dfsg-1)
Protein multiple alignment by sequence annealing
ampliconnoise (1.29-7+b1)
removal of noise from 454 sequenced PCR amplicons
andi (0.12-3)
Efficient Estimation of Evolutionary Distances
anfo (0.98-6)
Short Read Aligner/Mapper from MPG
aoflagger (2.11.0-1)
Find RFI in radio astronomical observations
apbs (1.4-1+b1)
Adaptive Poisson Boltzmann Solver
apertium-af-nl (0.2.0~r58256-2)
Apertium translation data for the Afrikaans-Dutch pair
apertium-all-dev (3.5.1-1)
Metapackage for all tools required for Apertium development
apertium-apy (0.11.3-1)
Apertium APY service
apertium-arg (0.1.2~r65494-2)
Apertium single language data for Aragonese
apertium-arg-cat (0.1.0~r64925-2)
Apertium translation data for the Aragonese-Catalan pair
apertium-bel (0.1.0~r81357-2)
Apertium single language data for Belarusian
apertium-bel-rus (0.2.0~r81186-2)
Apertium translation data for the Belarusian-Russian pair
apertium-br-fr (0.5.0~r61325-3)
Apertium linguistic data to translate between Breton and French
apertium-ca-it (0.1.1~r57554-2)
Apertium translation data for the Catalan-Italian pair
apertium-cat (2.4.0~r84327-1)
Apertium single language data for Catalan
apertium-cat-srd (1.0.0~r82995-2)
Apertium translation data for the Catalan-Sardinian pair
apertium-crh (0.2.0~r83161-2)
Apertium single language data for Crimean Tatar
apertium-crh-tur (0.3.0~r83159-2)
Apertium translation data for the Crimean Tatar-Turkish pair
apertium-cy-en (0.1.1~r57554-4)
Apertium translation data for the Welsh-English pair
apertium-dan (0.5.0~r67099-2)
Apertium single language data for Danish
apertium-dan-nor (1.3.0~r67099-2)
Apertium translation data for the Danish-Norwegian pair
apertium-dev (3.5.1-1)
Development tools and library for Apertium
apertium-en-gl (0.5.2~r57551-2)
Apertium translation data for the English-Galician pair
apertium-eo-en (1.0.0~r63833-2)
Apertium linguistic data to translate between Esperanto and English
apertium-eo-fr (0.9.0~r57551-1)
Apertium translation data for the Esperanto-French pair
apertium-es-ast (1.1.0~r51165-2)
Apertium translation data for the Spanish-Asturian pair
apertium-es-it (0.2.0~r78826-2)
Transitional dummy package for apertium-spa-ita
apertium-eu-en (0.3.1~r56205-2)
Apertium translation data for the Basque-English pair
apertium-fra (1.2.0~r84327-1)
Apertium single language data for French
apertium-fra-cat (1.3.0~r84327-1)
Apertium translation data for the French-Catalan pair
apertium-hbs (0.5.0~r68212-3)
Apertium single language data for Serbo-Croatian
apertium-hbs-eng (0.1.0~r57598-2)
Apertium translation data for the Serbo-Croatian - English pair
apertium-hbs-mkd (0.1.0~r76450-1)
Apertium translation data for the Serbo-Croatian-Macedonian pair
apertium-hbs-slv (0.1.0~r59294-1)
Apertium translation data for the Serbo-Croatian-Slovenian pair
apertium-hin (0.1.0~r59158-1)
Apertium single language data for Hindi
apertium-id-ms (0.1.1~r57551-1)
Apertium translation data for the Indonesian-Malay pair
apertium-is-sv (0.1.0~r76450-1)
Apertium translation data for the Icelandic-Swedish pair
apertium-isl (0.1.0~r65494-1)
Apertium single language data for Icelandic
apertium-isl-eng (0.1.0~r66083-1)
Apertium translation data for the Icelandic-English pair
apertium-ita (0.10.0~r82237-1)
Apertium single language data for Italian
apertium-kaz (0.1.0~r61338-2)
Apertium single language data for Kazakh
apertium-kaz-tat (0.2.1~r57554-1)
Apertium translation data for the Kazakh-Tatar pair
apertium-lex-tools (0.2.0~r84344-1)
Constraint-based lexical selection module
apertium-mk-bg (0.2.0~r49489-1)
Apertium translation data for the Macedonian-Bulgarian pair
apertium-mk-en (0.1.1~r57554-1)
Apertium translation data for the Macedonian-English pair
apertium-mlt-ara (0.2.0~r62623-1)
Apertium translation data for the Maltese-Arabic pair
apertium-nno (0.9.0~r69513-2)
Apertium single language data for Norwegian Nynorsk
apertium-nno-nob (1.1.0~r66076-1)
Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair
apertium-nob (0.9.0~r69513-1)
Apertium single language data for Norwegian Bokmål
apertium-rus (0.2.0~r82706-1)
Apertium single language data for Russian
apertium-separable (0.3.1-1)
Reordering separable/discontiguous multiwords
apertium-sme-nob (0.6.0~r61921-1)
Apertium translation data for the Northern Sami-Norwegian Bokmål pair
apertium-spa (1.1.0~r79716-1)
Apertium single language data for Spanish
apertium-spa-arg (0.4.0~r64399-1)
Apertium translation data for the Spanish-Aragonese pair
apertium-spa-cat (2.1.0~r79717-1)
Apertium translation data for the Spanish-Catalan pair
apertium-spa-ita (0.2.0~r78826-2)
Apertium translation data for the Spanish-Italian pair
apertium-srd (1.2.0~r82994-1)
Apertium single language data for Sardinian
apertium-srd-ita (0.9.5~r82237-1)
Apertium translation data for the Sardinian-Italian pair
apertium-swe (0.7.0~r69513-1)
Apertium single language data for Swedish
apertium-swe-dan (0.7.0~r66063-1)
Apertium translation data for the Swedish-Danish pair
apertium-swe-nor (0.2.0~r69544-2)
Apertium translation data for the Swedish-Norwegian pair
apertium-tat (0.1.0~r60887-1)
Apertium single language data for Tatar
apertium-tur (0.2.0~r83161-1)
Apertium single language data for Turkish
apertium-ukr (0.1.0~r82563-1)
Apertium single language data for Ukrainian
apertium-urd (0.1.0~r61311-1)
Apertium single language data for Urdu
apertium-urd-hin (0.1.0~r64379-1)
Apertium translation data for the Urdu-Hindi pair
aragorn (1.2.38-2)
tRNA and tmRNA detection in nucleotide sequences
arb (6.0.6-3) [non-free]
phylogenetic sequence analysis suite - main program
arb-common (6.0.6-3) [non-free]
phylogenetic sequence analysis suite - common files
arden (1.0-3)
specificity control for read alignments using an artificial reference
ariba (2.12.1+ds-1)
Antibiotic Resistance Identification By Assembly
art-nextgen-simulation-tools (20160605+dfsg-2+b2 [mips64el], 20160605+dfsg-2+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
simulation tools to generate synthetic next-generation sequencing reads
art-nextgen-simulation-tools-profiles (20160605+dfsg-2)
profiles for art simulation tools
artfastqgenerator (0.0.20150519-2)
outputs artificial FASTQ files derived from a reference genome
artfastqgenerator-examples (0.0.20150519-2)
ou7puts artificial FASTQ files derived from a reference genome (examples)
asdftool (2.0.1-1)
Command line tool to manipulate ASDF scientific data files
ase (3.16.2-1)
Atomic Simulation Environment
ask (1.1.1-2)
Adaptive Sampling Kit for big experimental spaces
assemblytics (0~20170131+ds-2)
detect and analyze structural variants from a genome assembly
astro-tasks (1.3)
Debian Astronomy Pure Blend (tasksel tasks)
astromatic (1.1)
Astronomical pipeline software collection
astrometry-data-2mass (1.1) [contrib]
Astrometry.net 2MASS index files downloader
astrometry-data-2mass-00 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (2'-2.8')
astrometry-data-2mass-01 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (2.8'-4')
astrometry-data-2mass-02 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (4'-5.6')
astrometry-data-2mass-03 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (5.6'-8')
astrometry-data-2mass-04 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (8'-11')
astrometry-data-2mass-05 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (11'-16')
astrometry-data-2mass-06 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (16'-22')
astrometry-data-2mass-07 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (22'-30')
astrometry-data-2mass-08-19 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (30'-2000')
astrometry-data-tycho2 (2-3)
Astrometry.net Tycho-2 index files
astrometry-data-tycho2-07 (2-3)
Astrometry.net Tycho-2 index files (22'-30')
astrometry-data-tycho2-07-bigendian (2-3)
Astrometry.net Tycho-2 big endian index files (22'-30')
astrometry-data-tycho2-07-littleendian (2-3)
Astrometry.net Tycho-2 little endian index files (22'-30')
astrometry-data-tycho2-08 (2-3)
Astrometry.net Tycho-2 index files (30'-44')
astrometry-data-tycho2-08-bigendian (2-3)
Astrometry.net Tycho-2 big endian index files (30'-44')
astrometry-data-tycho2-08-littleendian (2-3)
Astrometry.net Tycho-2 little endian index files (30'-44')
astrometry-data-tycho2-09 (2-3)
Astrometry.net Tycho-2 index files (44'-60')
astrometry-data-tycho2-09-bigendian (2-3)
Astrometry.net Tycho-2 big endian index files (44'-60')
astrometry-data-tycho2-09-littleendian (2-3)
Astrometry.net Tycho-2 little endian index files (44'-60')
astrometry-data-tycho2-10-19 (2-3)
Astrometry.net Tycho-2 index files (60'-2000')
astrometry-data-tycho2-10-19-bigendian (2-3)
Astrometry.net Tycho-2 big endian index files (60'-2000')
astrometry-data-tycho2-10-19-littleendian (2-3)
Astrometry.net Tycho-2 little endian index files (60'-2000')
astrometry.net (0.74+dfsg-1)
Astrometry plate solver
astronomical-almanac (5.6-5)
astronomical almanac - calculate planet and star positions
astropy-utils (3.0.3-3)
Command line tools from astropy
atac (0~20150903+r2013-3)
genome assembly-to-assembly comparison
augustus (3.3.1+dfsg-1)
gene prediction in eukaryotic genomes
augustus-data (3.3.1+dfsg-1)
data files for AUGUSTUS
autodock (4.2.6-5)
analysis of ligand binding to protein structure
autodock-getdata (4.2.6-5)
instructions for getData to collect compounds
autodock-test (4.2.6-5)
test files for AutoDock
autodock-vina (1.1.2-5)
docking of small molecules to proteins
autogrid (4.2.6-5)
pre-calculate binding of ligands to their receptor
autogrid-test (4.2.6-5)
test files for AutoGrid
avce00 (2.0.0-5)
Conversion of ESRI Arcinfo Vector Coverage in E00 format
avogadro (1.2.0-3+b1)
Molecular Graphics and Modelling System
avogadro-data (1.2.0-3)
Molecular Graphics and Modelling System (Data Files)
axe-demultiplexer (0.3.3+dfsg-1)
Trie-based DNA sequencing read demultiplexer
bagel (1.1.1-2)
Computational Chemistry Package
baitfisher (1.0+dfsg-2)
software package for designing hybrid enrichment probes
bali-phy (3.2+dfsg-1)
Bayesian Inference of Alignment and Phylogeny
bamtools (2.5.1+dfsg-3)
toolkit for manipulating BAM (genome alignment) files
barrnap (0.9+dfsg-1)
rapid ribosomal RNA prediction
bart (0.4.03-2)
tools for computational magnetic resonance imaging
bart-view (0.1.00-1)
viewer for multi-dimensional complex-valued data
bauble (0.9.7-2.1)
biodiversity collection manager software application
bcftools (1.8-1)
genomic variant calling and manipulation of VCF/BCF files
beads (1.1.18+dfsg-1)
2-DE electrophoresis gel image spot detection
beagle (4.1~180127+dfsg-1)
Genotype calling, genotype phasing and imputation of ungenotyped markers
beast-mcmc (1.8.4+dfsg.1-3)
Bayesian MCMC phylogenetic inference
bedops (2.4.35+dfsg-1)
high-performance genomic feature operations
bedtools (2.26.0+dfsg-5)
suite of utilities for comparing genomic features
bedtools-test (2.26.0+dfsg-5)
test data for the bedtools package
belvu (4.44.1+dfsg-2+b1)
multiple sequence alignment viewer and phylogenetic tool
berkeley-express (1.5.2+dfsg-1)
Streaming quantification for high-throughput sequencing
bibus (1.5.2-5)
bibliographic database
bio-eagle (2.4-1)
Haplotype phasing within a genotyped cohort or using a phased reference panel
bio-eagle-examples (2.4-1)
Examples for bio-eagle
bio-rainbow (2.0.4+dfsg-1)
clustering and assembling short reads for bioinformatics
biogenesis (0.8-2)
artificial life program that simulates evolution of organisms
bioperl (1.7.2-2)
Perl tools for computational molecular biology
bioperl-run (1.7.2-3)
BioPerl wrappers: scripts
biosig-tools (1.3.0-2.3+b1)
format conversion tools for biomedical data formats
biosquid (1.9g+cvs20050121-10)
utilities for biological sequence analysis
biosyntax-example (0.1~beta4+dfsg-1)
Syntax Highlighting for Computational Biology (example)
biosyntax-gedit (0.1~beta4+dfsg-1)
Syntax Highlighting for Computational Biology (gedit)
biosyntax-less (0.1~beta4+dfsg-1)
Syntax Highlighting for Computational Biology (less)
biosyntax-vim (0.1~beta4+dfsg-1)
Syntax Highlighting for Computational Biology (vim)
bist (0.5.2-1.1+b4 [mips64el], 0.5.2-1.1+b3 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
chemical drawing tool
bitseq (0.7.5+dfsg-3)
Bayesian Inference of Transcripts from Sequencing Data
bkchem (0.13.0-6)
Chemical structures editor
blast2 (1:2.7.1-1)
transitional dummy package to ncbi-blast+-legacy
blimps-utils (3.9-3) [non-free]
blocks database improved searcher
blixem (4.44.1+dfsg-2+b1)
interactive browser of sequence alignments
bmt (0.6-1)
software analysis benchmarking toolkit
bodr (10-1)
Blue Obelisk Data Repository
boinc-app-seti (8.00~svn3725-3)
SETI@home application for the BOINC client
boinc-app-seti-graphics (8.00~svn3725-3)
SETI@home application for the BOINC client (with graphics)
bolt-lmm (2.3.2+dfsg-2)
Efficient large cohorts genome-wide Bayesian mixed-model association testing
bolt-lmm-example (2.3.2+dfsg-2)
Examples for bolt-lmm
boolector (1.5.118.6b56be4.121013-1+b1)
SMT solver for bit-vectors and arrays
bowtie (1.2.2+dfsg-3)
Ultrafast memory-efficient short read aligner
bowtie-examples (1.2.2+dfsg-3)
Examples for bowtie, the ultrafast memory-efficient short read aligner
bowtie2 (2.3.4.1-2)
ultrafast memory-efficient short read aligner
bowtie2-examples (2.3.4.1-2)
Examples for bowtie2
boxshade (3.3.1-11)
Pretty-printing of multiple sequence alignments
bppphyview (0.6.0-1)
Bio++ Phylogenetic Viewer
bppsuite (2.4.0-1)
Bio++ program suite
bppsuite-examples (2.4.0-1)
Examples for Bio++ program suite
brig (0.95+dfsg-1)
BLAST Ring Image Generator
bwa (0.7.17-1)
Burrows-Wheeler Aligner
cafeobj (1.5.7-4)
new generation algebraic specification and programming language
cafeobj-mode (1.5.7-4)
Emacs major mode for editing CafeOBJ source code
caffe-cpu (1.0.0-8)
Fast, open framework for Deep Learning (Meta)
caffe-tools-cpu (1.0.0-8)
Tools for fast, open framework for Deep Learning (CPU_ONLY)
cain (1.10+dfsg-2)
simulations of chemical reactions
cain-examples (1.10+dfsg-2)
examples for cain
cain-solvers (1.10+dfsg-2)
solvers for cain
calculix-ccx (2.11-1+b2)
Three-Dimensional Structural Finite Element Program
calculix-cgx (2.11+dfsg-1+b1)
Calculix cgx is a 3-dimensional pre- and post-processor for fem
camitk-actionstatemachine (4.0.4-2+b2)
pipeline replay application for the CamiTK library
camitk-config (4.0.4-2+b2)
Computer Assisted Medical Intervention Tool Kit - config
camitk-imp (4.0.4-2+b2)
workbench application for the CamiTK library
canu (1.7+dfsg-1)
single molecule sequence assembler for genomes
casacore-data-igrf (12-1)
International Geomagnetic Reference Field data for casacore
casacore-data-lines (0+git2016.11.26-2)
Table of spectral line frequencies for casacore
casacore-data-observatories (0+git2016.11.02-1)
Table of radio observatory coordinates for casacore
casacore-data-sources (2-2)
Table of ICRF reference source coordinates for casacore
casacore-data-tai-utc (1.2)
Difference table between TAI and UTC for casacore
casacore-tools (2.4.1-1)
Tools built with CASA
cassbeam (1.1-1+b1)
Cassegrain antenna modelling
cassiopee (1.0.8-1)
index and search tool in genomic sequences
cba (0.3.6-4.1+b2)
Continuous Beam Analysis
cbflib-bin (0.9.2.2-1+b1)
utilities to manipulate CBF files
cbmc (5.9-6)
bounded model checker for C and C++ programs
cclib (1.3.1-1)
Parsers and algorithms for computational chemistry
cclib-data (1.1-1) [non-free]
Parsers and algorithms for computational chemistry (data files)
cd-hit (4.6.8-1)
suite of programs designed to quickly group sequences
cdbfasta (0.99-20100722-4)
Constant DataBase indexing and retrieval tools for multi-FASTA files
centrifuge (1.0.3-1)
rapid and memory-efficient system for classification of DNA sequences
cernlib (20061220+dfsg3-4.3)
CERNLIB data analysis suite - general use metapackage
cernlib-core (20061220+dfsg3-4.3)
CERNLIB data analysis suite - main libraries and programs
cernlib-extras (20061220+dfsg3-4.3)
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (20061220+dfsg3-3.1)
CERNLIB Monte Carlo libraries
cg3 (1.0.0~r12254-1+b1)
Tools for using the 3rd edition of Constraint Grammar (CG-3)
cgns-convert (3.3.0-6)
CFD General Notation System - Conversion tools
cgview (0.0.20100111-3)
Circular Genome Viewer
ch5m3d (1.2.5+dfsg-1)
create and visualize 3-dimensional drawings of simple molecules
checkit-tiff (0.2.3-2)
conformance checker for baseline TIFFs
chemical-structures (2.2.dfsg.0-13)
set of molecular structures in open formats
chemps2 (1.8.7-3)
Executable to call libchemps2-3 from the command line
chemtool (1.6.14-2)
chemical structures drawing program
chimeraslayer (20101212+dfsg1-2)
detects likely chimeras in PCR amplified DNA
chromhmm (1.15+dfsg-1)
Chromatin state discovery and characterization
chromimpute (1.0.3+dfsg-1)
Large-scale systematic epigenome imputation
circlator (1.5.5-1)
circularize genome assemblies
circos (0.69.6+dfsg-1)
plotter for visualizing data
circos-tools (0.22-2)
plotter for visualizing data - helper utilities
ckon (0.7.1-3+b4 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x], 0.7.1-3+b3 [mips64el])
automatic build tool for ROOT data analysis software
clearcut (1.0.9-2)
extremely efficient phylogenetic tree reconstruction
clonalframe (1.2-8)
inference of bacterial microevolution using multilocus sequence data
clonalframeml (1.11-1)
Efficient Inference of Recombination in Whole Bacterial Genomes
clonalorigin (1.0-2)
inference of homologous recombination in bacteria using whole genome sequences
clustalo (1.2.4-1)
General purpose multiple sequence alignment program for proteins
clustalw (2.1+lgpl-6)
global multiple nucleotide or peptide sequence alignment
clustalx (2.1+lgpl-6)
Multiple alignment of nucleic acid and protein sequences (graphical interface)
cluster3 (1.53-1) [non-free]
Reimplementation of the Eisen-clustering software
cmor-tables (3.2-1)
MIP tables for the Climate Model Output Rewriter library
cmtk (3.3.1-1.2+b1)
Computational Morphometry Toolkit
cod-tools (2.2+dfsg-2)
tools for manipulating CIF format files
code-aster-gui (1.13.1-2.1)
Graphical user interface for Code_Aster - client
code-aster-run (1.13.1-2.1)
Graphical user interface for Code_Aster - server
code-saturne (5.2.0+repack-1)
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (5.2.0+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (5.2.0+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-doc (5.2.0+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - Documentation
code-saturne-include (5.2.0+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - includes
codonw (1.4.4-4)
Correspondence Analysis of Codon Usage
coinor-cbc (2.9.9+repack1-1+b1 [mips64el], 2.9.9+repack1-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Coin-or branch-and-cut mixed integer programming solver
coinor-clp (1.16.11+repack1-1+b1 [mips64el], 1.16.11+repack1-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Coin-or linear programming solver
coinor-csdp (6.1.1-1+b2)
A software package for semidefinite programming
coinor-libcbc3 (2.9.9+repack1-1+b1 [mips64el], 2.9.9+repack1-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Coin-or branch-and-cut mixed integer programming solver (shared libraries)
coinor-libcgl1 (0.59.10+repack1-1+b1 [mips64el], 0.59.10+repack1-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
COIN-OR Cut Generation Library
coinor-libclp1 (1.16.11+repack1-1+b1 [mips64el], 1.16.11+repack1-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Coin-or linear programming solver (shared libraries)
coinor-libcoinutils3v5 (2.10.14+repack1-1+b1 [mips64el], 2.10.14+repack1-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Coin-or collection of utility classes (binaries and libraries)
coinor-libflopc++0 (1.0.6-3.1+b3 [mips, mipsel], 1.0.6-3.1+b2 [amd64, armel, armhf, i386, s390x], 1.0.6-3.1+b1 [ppc64el], 1.0.6-3.1 [arm64, mips64el])
Formulation of Linear Optimization Problems in C++
coinor-libosi1v5 (0.107.9+repack1-1+b1 [mips64el], 0.107.9+repack1-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
COIN-OR Open Solver Interface
coinor-libsymphony3 (5.6.16+repack1-1+b1 [mips64el], 5.6.16+repack1-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
COIN-OR solver for mixed-integer linear programs (shared libraries)
coinor-symphony (5.6.16+repack1-1+b1 [mips64el], 5.6.16+repack1-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
COIN-OR solver for mixed-integer linear programs
colmap (3.4-2)
Structure-from-Motion and Multi-View Stereo
comet-ms (2017014-2)
Tandem mass spectrometry (MS/MS) search engine
concavity (0.1+dfsg.1-2)
predictor of protein ligand binding sites from structure and conservation
connectome-workbench (1.2.3+git41-gc4c6c90-2+b1 [mips64el], 1.2.3+git41-gc4c6c90-2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
brain visualization, analysis and discovery tool
conservation-code (20110309.0-6)
protein sequence conservation scoring tool
cp2k (5.1-4)
Ab Initio Molecular Dynamics
cp2k-data (5.1-4)
Ab Initio Molecular Dynamics (data files)
cpl-plugin-amber (4.3.8+dfsg-1)
ESO data reduction pipeline for the AMBER instrument
cpl-plugin-amber-calib (4.3.8+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for AMBER
cpl-plugin-fors (5.3.32+dfsg-1)
ESO data reduction pipeline for the FORS1/2 instruments
cpl-plugin-fors-calib (5.3.32+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for FORS2
cpl-plugin-giraf (2.16.3+dfsg-1)
ESO data reduction pipeline for the GIRAFFE instrument
cpl-plugin-giraf-calib (2.16.3+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for GIRAFFE
cpl-plugin-hawki (2.4.2+dfsg-1)
ESO data reduction pipeline for the HAWK-I instrument
cpl-plugin-hawki-calib (2.4.2+dfsg-1)
ESO data reduction pipeline calibration data downloader for HAWK-I
cpl-plugin-kmos (2.0.2+dfsg-1)
ESO data reduction pipeline for the KMOS instrument
cpl-plugin-kmos-calib (2.0.2+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for KMOS
cpl-plugin-muse (2.4.1+dfsg-1)
ESO data reduction pipeline for the MUSE instrument
cpl-plugin-muse-calib (2.4.1+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for MUSE
cpl-plugin-naco (4.4.6+dfsg-1)
ESO data reduction pipeline for the NaCo instrument
cpl-plugin-naco-calib (4.4.6+dfsg-1) [contrib]
ESO data reduction pipeline NaCo calibration data downloader
cpl-plugin-uves (5.9.1+dfsg-1)
ESO data reduction pipeline for the UVES instrument
cpl-plugin-uves-calib (5.9.1+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for UVES
cpl-plugin-vimos (3.2.3+dfsg-2)
ESO data reduction pipeline for the VIMOS instrument
cpl-plugin-vimos-calib (3.2.3+dfsg-2) [contrib]
ESO data reduction pipeline calibration data downloader for VIMOS
cpl-plugin-visir (4.3.7+dfsg-1)
ESO data reduction pipeline for the VISIR instrument
cpl-plugin-visir-calib (4.3.7+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for VISIR
cpl-plugin-xshoo (3.1.0+dfsg-1)
ESO data reduction pipeline for the XSHOOTER instrument
cpl-plugin-xshoo-calib (3.1.0+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for XSHOOTER
crac (2.5.0+dfsg-2)
integrated RNA-Seq read analysis
critterding (1.0-beta12.1-1.3+b1)
Evolving Artificial Life
ctdconverter (2.0-4)
Convert CTD files into Galaxy tool and CWL CommandLineTool files
ctsim (6.0.2-2)
Computed tomography simulator
ctsim-help (6.0.2-2)
Online help file for CTSim
cufflinks (2.2.1+dfsg.1-2) [non-free]
Transcript assembly, differential expression and regulation for RNA-Seq
cutadapt (1.16-2)
Clean biological sequences from high-throughput sequencing reads
cwltool (1.0.20180302231433-1)
Common Workflow Language reference implementation
daligner (1.0+20180108-1)
local alignment discovery between long nucleotide sequencing reads
dans-gdal-scripts (0.24-1+b5)
GDAL contributed tools by Geographic Information Network of Alaska
dascrubber (0~20180108-1)
alignment-based scrubbing pipeline for DNA sequencing reads
datalad (0.10.2-1)
data files management and distribution platform
dawg (1.2-1+b1)
program to simulate the evolution of recombinant DNA sequences
dazzdb (1.0+20180115-1)
manage nucleotide sequencing read data
dcl-f77 (7.3.3-1)
GFD-DENNOU Club Library (DCL) - FORTRAN77 version
dcm2niix (1.0.20171215-1)
next generation DICOM to NIfTI converter
dcmtk (3.6.2-3+b1)
OFFIS DICOM toolkit command line utilities
(1.3)
Debian Astronomy Pure Blends Logo
deepnano (0.0+git20170813.e8a621e-2)
alternative basecaller for MinION reads of genomic sequences
deepnano-data (0.0+git20170813.e8a621e-2)
alternative basecaller for MinION reads of genomic sequences (data)
dh-r (20180713)
Debian helper tools for packaging R libraries
dialign (2.2.1-9)
Segment-based multiple sequence alignment
dialign-tx (1.0.2-11)
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-11)
Segment-based multiple sequence alignment (data files)
diamond-aligner (0.9.22+dfsg-1)
accelerated BLAST compatible local sequence aligner
dicomnifti (2.32.1-1+b1)
converts DICOM files into the NIfTI format
dicompyler (0.4.2.0-1)
radiation therapy research platform
dimbl (0.15-2)
Distributed Memory Based Learner
dindel (1.01+dfsg-4+b1)
determines indel calls from short-read data
discosnp (1.2.6-2)
discovering Single Nucleotide Polymorphism from raw set(s) of reads
disulfinder (1.2.11-7+b1 [mips64el], 1.2.11-7 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
cysteines disulfide bonding state and connectivity predictor
disulfinder-data (1.2.11-7)
data files for predictor of disulfide bonds in proteins
dnaclust (3-5)
tool for clustering millions of short DNA sequences
doris (5.0.3~beta+dfsg-5) [contrib]
Delft object-oriented radar interferometric software
dotter (4.44.1+dfsg-2+b1)
detailed comparison of two genomic sequences
dozzaqueux (3.51-2)
simulator for chemical mixtures
dozzaqueux-data (3.51-2)
databases for chemical mixtures
dpuser (3.3+p1+dfsg-2+b2 [mips64el], 3.3+p1+dfsg-2+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Interactive language for handling numbers, strings, and matrices
drawxtl (5.5-3+b3)
crystal structure viewer
drslib (0.3.1.p3-1)
Command-line tools for the Data Reference Syntax library
dsdp (5.8-9.4)
Software for Semidefinite Programming
dssp (3.0.0-2)
protein secondary structure assignment based on 3D structure
dwgsim (0.1.12-1)
short sequencing read simulator
dx (1:4.4.4-10+b3 [mips64el], 1:4.4.4-10+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
OpenDX (IBM Visualization Data Explorer) - main package
dxf2gcode (20170925-4)
prepares drawings of parts for automatic machine tools
dxsamples (4.4.0-3)
Sample programs for the OpenDX Data Explorer
e-mem (1.0.1-1)
Efficient computation of Maximal Exact Matches for very large genomes
e00compr (1.0.1-3)
Program to read/write Arcinfo compressed E00 files
ea-utils (1.1.2+dfsg-5)
command-line tools for processing biological sequencing data
easychem (0.6-8+b1)
Draw high-quality molecules and 2D chemical formulas
ecaccess (4.0.1-1)
clients to access ECMWF facilities
ecflow-client (4.9.0-3)
Client tools for Meteorological workflow
ecflow-server (4.9.0-3)
Meteorological workflow controller - server
ecopcr (0.5.0+dfsg-1)
estimate PCR barcode primers quality
edfbrowser (1.64+dfsg-1)
viewer for biosignal storage files such as bdf and edf
edtsurf (0.2009-5)
triangulated mesh surfaces for protein structures
eficas (6.4.0-1-2)
Graphical editor for Code Aster command files
eigensoft (6.1.4+dfsg-1+b3 [mips64el], 6.1.4+dfsg-1+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
reduction of population bias for genetic analyses
elastix (4.8-12+b1)
toolbox for rigid and nonrigid registration of images
elk-lapw (4.0.15-2+b4 [mips64el], 4.0.15-2+b3 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
All-Electron Density-Functional Electronic Structure Code
embassy-domainatrix (0.1.660-2)
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.660-2)
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (1:0.1.660-2)
Extra EMBOSS commands to search for protein domains
embassy-phylip (3.69.660-2) [non-free]
EMBOSS conversions of the programs in the phylip package
emboss (6.6.0+dfsg-6+b1)
European molecular biology open software suite
emboss-data (6.6.0+dfsg-6)
data files for the EMBOSS package
emboss-explorer (2.2.0-9)
web-based GUI to EMBOSS
emboss-lib (6.6.0+dfsg-6+b1)
EMBOSS Libraries
engauge-digitizer (10.5+ds.1-1)
interactively extracts numbers from bitmap graphs or maps
ent (1.2debian-1+b1)
pseudorandom number sequence test program
epsilon-bin (0.9.2+dfsg-2)
Library for wavelet image compression - tools
ergo (3.5-1+b1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x], 3.5-1 [mips, mipsel])
Quantum chemistry program for large-scale calculations
eso-midas (17.02pl1.2-2+b2 [mips64el], 17.02pl1.2-2+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
European Southern Observatory Munich Image Data Analysis System
eso-midas-testdata (17.02pl1.2-2)
Test data files for ESO-MIDAS
eso-pipelines (1.2)
ESO VLT Instrument pipeline collection
esorex (3.13.1-1)
Execution Tool for European Southern Observatory pipelines
esys-particle (2.3.5+dfsg1-2+b3 [mips64el], 2.3.5+dfsg1-2+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Software for particle-based numerical modelling. MPI version.
etsf-io (1.0.4-1.1+b3)
Binary tools to check, merge and read ETSF files
examl (3.0.21-2)
Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
exonerate (2.4.0-3)
generic tool for pairwise sequence comparison
expeyes (4.4.3+dfsg-1)
hardware & software framework for developing science experiments
expeyes-clib (4.4.3+dfsg-1)
hardware & software framework for developing science experiments
eyes17 (4.4.3+dfsg-1)
hardware & software framework for developing science experiments
falcon (1.8.8-1)
diploid-aware genome assembly of single-molecule sequencing reads
fast5 (0.6.5-1)
utilities for manipulating Oxford Nanopore Fast5 files
fasta3 (36.3.8g-1) [non-free]
tools for searching collections of biological sequences
fasta3-doc (36.3.8g-1) [non-free]
user guide for FASTA tools
fastahack (0.0+20160702-1+b1 [amd64, arm64, armel, armhf, i386, mips, mips64el, mipsel, ppc64el], 0.0+20160702-1 [s390x])
utility for indexing and sequence extraction from FASTA files
fastaq (3.17.0-2)
FASTA and FASTQ file manipulation tools
fastdnaml (1.2.2-13)
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix100+dfsg-2)
faster version of pedigree programs of Linkage
fastml (3.1-4)
maximum likelihood ancestral amino-acid sequence reconstruction
fastqc (0.11.7+dfsg-1)
quality control for high throughput sequence data
fastqtl (2.184+dfsg-5+b3 [mips64el], 2.184+dfsg-5+b2 [amd64, arm64, armel, i386, mipsel, ppc64el], 2.184+dfsg-5+b1 [armhf, mips, s390x])
Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes
fasttree (2.1.10-1)
phylogenetic trees from alignments of nucleotide or protein sequences
fastx-toolkit (0.0.14-5+b1 [mips64el], 0.0.14-5 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
FASTQ/A short nucleotide reads pre-processing tools
fcc (2.8-1+b3 [mips64el], 2.8-1+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Script to compile C/C++ programs and link to Fortran libraries
feedgnuplot (1.49-2)
Pipe-oriented frontend to Gnuplot
ffindex (0.9.9.7-4+b1)
simple index/database for huge amounts of small files
figtree (1.4.3+dfsg-5)
graphical phylogenetic tree viewer
fitgcp (0.0.20150429-1)
fitting genome coverage distributions with mixture models
fitscut (1.4.4-4+b3)
Extract cutouts from FITS image format files
fitsh (0.9.2-1+b1)
Software package for astronomical image processing
fitspng (1.3-1)
FITS to PNG converter
fitsverify (4.18-2)
FITS File Format-Verification Tool
fityk (1.3.1-3)
general-purpose nonlinear curve fitting and data analysis
flexbar (1:3.2.0-1)
flexible barcode and adapter removal for sequencing platforms
flextra (5.0-10)
Trajectory model for tracing air transport phenomena
fml-asm (0.1-5)
tool for assembling Illumina short reads in small regions
foma-bin (0.9.18+r243-1+b3)
Xerox-compatible finite-state compiler - library
form (4.2.0+git20180528-1)
Symbolic manipulation system
fractalnow (0.8.2-1+b1)
Fast, advanced fractal generator
(1.4.77-1.2)
Free42 is a re-implementation of the HP-42S calculator
freebayes (1.2.0-1)
Bayesian haplotype-based polymorphism discovery and genotyping
freecontact (1.0.21-6+b1)
fast protein contact predictor
freediams (0.9.4-2)
pharmaceutical drug prescription and interaction manager
freemedforms-common-resources (0.9.4-2)
common data for the FreeMedForms project applications
freemedforms-emr (0.9.4-2)
electronic medical record manager
freemedforms-emr-resources (0.9.4-2)
data for the FreeMedForms EMR
freemedforms-freedata (0.9.4-2)
free extra-data for the FreeMedForms project
freemedforms-libs (0.9.4-2)
common libs for the FreeMedForms project
freemedforms-project (0.9.4-2)
set of medical applications for health professionals
freemedforms-theme (0.9.4-2)
theme for the FreeMedForms project
frog (0.13.7-1+b1)
tagger and parser for natural languages (runtime)
frogdata (0.13-1)
Data files for Frog
fsa (1.15.9+dfsg-3)
Fast Statistical Alignment of protein, RNA or DNA sequences
fsm-lite (1.0-3)
frequency-based string mining (lite)
ftools-fv (5.5+dfsg-1)
Tool for viewing and editing FITS format files
ftools-pow (5.5+dfsg-1)
Curve plotting and image display interface tool
funtools (1.4.7-3)
Minimal buy-in FITS utility package
fw4spl (14.0.0-1)
FrameWork for Software Production Line
fxt-tools (0.3.8-1)
Multithreaded tracing library
g3data (1:1.5.3-2.1+b1)
extract data from scanned graphs
gabedit (2.4.8-3+b2)
graphical user interface to Ab Initio packages
galileo (0.5.1-5)
Utility to securely synchronize a Fitbit device with the Fitbit web service
galileo-daemon (0.5.1-5)
Utility to securely synchronize a Fitbit device - daemon
gamgi (0.17.3-1)
General Atomistic Modelling Graphic Interface (GAMGI)
gamgi-data (0.17.3-1)
General Atomistic Modelling Graphic Interface (data)
garli (2.1-2)
phylogenetic analysis of molecular sequence data using maximum-likelihood
garli-examples (2.1-2)
phylogenetic analysis of molecular sequence data (examples)
garlic (1.6-2)
visualization program for biomolecules
gasic (0.0.r19-1)
genome abundance similarity correction
gausssum (3.0.2-1)
parse and display Gaussian, GAMESS, and etc's output
gazebo9 (9.0.0+dfsg5-4.1)
Open Source Robotics Simulator - Binaries
gazebo9-common (9.0.0+dfsg5-4.1)
Open Source Robotics Simulator - Shared files
gazebo9-plugin-base (9.0.0+dfsg5-4.1)
Open Source Robotics Simulator - base plug-ins
gbrowse (2.56+dfsg-3)
GMOD Generic Genome Browser
gbrowse-calign (2.56+dfsg-3)
CAlign helper
gbrowse-data (2.56+dfsg-3)
Sample data to use GBrowse
gbutils (5.7.1-1)
utilities for command line econometrics
gchempaint (0.14.17-1+b1)
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.14.17-1+b1)
lightweight crystal structures visualizer
gcu-bin (0.14.17-1+b1)
GNOME chemistry utils (helper applications)
gcu-plugin (0.14.17-1+b1)
GNOME chemistry utils (browser plugin)
gcx (1.3-1.1+b2)
astronomical image processing and photometry gtk+ application
gdal-bin (2.3.1+dfsg-1)
Geospatial Data Abstraction Library - Utility programs
gdal-data (2.3.1+dfsg-1)
Geospatial Data Abstraction Library - Data files
gdis (0.90-5+b1)
molecular and crystal model viewer
gdis-data (0.90-5)
molecular and crystal model viewer (data files)
gdl-astrolib (2018.05.21+dfsg-1)
Low-level astronomy software for GDL
gdl-coyote (2016.11.13-2)
GDL library from D. Fannings IDL courses
gdl-mpfit (1.85+2017.01.03-2)
Robust non-linear least squares curve fitting for GDL
gdpc (2.2.5-8)
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-8)
example files for the gdpc program
geant321 (1:3.21.14.dfsg-11)
[Physics] Particle detector description and simulation tool
geant321-data (1:3.21.14.dfsg-11)
[Physics] Data for GEANT 3.21 detector simulator
gelemental (1.2.0-11)
Periodic Table viewer
gemma (0.97+dfsg-3)
Genome-wide Efficient Mixed Model Association
gemma-doc (0.97+dfsg-3)
Example folder for GEMMA
genometester (4.0-1)
toolkit for performing set operations on k-mer lists
genometools (1.5.10+ds-2)
versatile genome analysis toolkit
genometools-common (1.5.10+ds-2)
shared data files for GenomeTools
gentle (1.9+cvs20100605+dfsg1-6)
suite to plan genetic cloning
geographiclib-tools (1.49-2)
C++ library to solve some geodesic problems -- tools
geotiff-bin (1.4.2-2+b2)
GeoTIFF (geografic enabled TIFF) library -- tools
gerris (20131206+dfsg-18+b1)
Fluid Flow Solver
getdata (0.2-2)
management of external databases
gff2aplot (2.0-9)
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98l-2)
produces PostScript graphical output from GFF-files
gfsview (20121130+dfsg-5+b1)
graphical viewer for Gerris simulation files
gfsview-batch (20121130+dfsg-5+b1)
batch-version of viewer for Gerris simulation files
giella-core (0.1.1~r129227+svn121148-1)
GTCORE files for building Giellatekno language packages
giella-sme (0.0.20150917~r121176-2)
Giellatekno single language data for North Saami
giella-sme-dev (0.0.20150917~r121176-2)
Giellatekno single language data for North Saami (dev extras)
giira (0.0.20140625-1)
RNA-Seq driven gene finding incorporating ambiguous reads
ginga (2.7.0-2)
Astronomical image viewer
ginkgocadx (3.8.7-1)
Medical Imaging Software and complete DICOM Viewer
glam2 (1064-4)
gapped protein motifs from unaligned sequences
gliese (3.0.95-2) [non-free]
stellar data set from the Third Catalogue of Nearby Stars
glueviz (0.13.3+dfsg-1)
Linked data visualization
gmap (2017-11-15-1) [non-free]
spliced and SNP-tolerant alignment for mRNA and short reads
gmt (5.4.4+dfsg-1)
Generic Mapping Tools
gmt-common (5.4.4+dfsg-1)
Generic Mapping Tools - Architecture-independent files
gmt-dcw (1.1.4-1)
Digital Chart of the World (DCW) for GMT
gmt-gshhg (2.3.7-2)
Global Self-consistent Hierarchical High-resolution Geography (GSHHG)
gmt-gshhg-full (2.3.7-2)
Full resolution coastlines for the Generic Mapping Tools
gmt-gshhg-high (2.3.7-2)
High resolution coastlines for the Generic Mapping Tools
gmt-gshhg-low (2.3.7-2)
Low resolution coastlines for the Generic Mapping Tools
gnuastro (0.6.8-1)
GNU Astronomy Utilities programs
gpaw (1.4.0-2)
DFT and beyond within the projector-augmented wave method
gpaw-data (0.9.20000-1)
gpaw datasets/setups
gperiodic (3.0.2-1)
periodic table application
gpx (2.5.2-3)
Gcode to x3g conversion post processor
gpx2shp (0.71.0-4+b2)
convert GPS or GPX file to ESRI Shape file
gr-fcdproplus (3.7.25.4b6464b-5+b2)
Funcube Dongle Pro Plus controller for GNU Radio
grabix (0.1.6+git20171023-1)
wee tool for random access into BGZF files
graphlan (1.1-3)
circular representations of taxonomic and phylogenetic trees
grass (7.4.1-2)
Geographic Resources Analysis Support System (GRASS GIS)
grass-core (7.4.1-2)
GRASS GIS core components
grass-gui (7.4.1-2)
GRASS GIS graphical user interfaces
gravit (0.5.1+dfsg-2+b2)
visually stunning gravity simulator
gravit-data (0.5.1+dfsg-2)
data files for Gravit
gri (2.12.26-1+b1)
a language for scientific illustration
grinder (0.5.4-4)
Versatile omics shotgun and amplicon sequencing read simulator
gromacs (2018.2-2)
Molecular dynamics simulator, with building and analysis tools
gromacs-data (2018.2-2)
GROMACS molecular dynamics sim, data and documentation
gromacs-mpich (2018.2-2)
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (2018.2-2)
Molecular dynamics sim, binaries for OpenMPI parallelization
gubbins (2.3.1-1)
phylogenetic analysis of genome sequences
gvb (1.4-1)
visual simulator of 1 and 2-dimensional vibrations
gwama (2.2.2+dfsg-2)
Genome-Wide Association Meta Analysis
gwyddion (2.50-2)
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.50-2)
architecture-independent files for Gwyddion SPM analysis tool
gwyddion-plugins (2.50-2)
plugins for Gwyddion SPM analysis tool
gyoto (1.2.0-4)
General relativistic geodesic integration and ray-tracing
gyoto-bin (1.2.0-4+b2)
General relativistic ray-tracing command-line interface
h5utils (1.13.1-1)
HDF5 files visualization tools
harminv (1.4-2)
extraction of complex frequencies and amplitudes from time series
harvest-tools (1.3-1+b1)
archiving and postprocessing for reference-compressed genomic multi-alignments
hdf-compass (0.6.0-1)
viewer for HDF5 and related formats
hdf5-helpers (1.10.0-patch1+docs-4+b2 [mips64el], 1.10.0-patch1+docs-4+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Hierarchical Data Format 5 (HDF5) - Helper tools
hdf5-tools (1.10.0-patch1+docs-4+b2 [mips64el], 1.10.0-patch1+docs-4+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Hierarchical Data Format 5 (HDF5) - Runtime tools
herisvm (0.8.1-1)
machine learning tools for classification algorithms
hfst (3.13.0~r3461-2+b1)
Helsinki Finite-State Transducer Technology
hfst-ospell (0.4.5~r343-2.1+b2 [mips64el], 0.4.5~r343-2.1+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Spell checker library and tool based on HFST
hhsuite (3.0~beta2+dfsg-3)
sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data (3.0~beta2+dfsg-3)
sensitive protein sequence searching based on HMM-HMM alignment (data)
hilive (1.1-1)
realtime alignment of Illumina reads
hinge (0.5.0-3)
long read genome assembler based on hinging
hisat2 (2.1.0-1)
graph-based alignment of short nucleotide reads to many genomes
hmmer (3.1b2+dfsg-5)
profile hidden Markov models for protein sequence analysis
hmmer2 (2.3.2+dfsg-5)
profile hidden Markov models for protein sequence analysis
hmmer2-pvm (2.3.2+dfsg-5)
HMMER programs with PVM (Parallel Virtual Machine) support
hodie (1.5-2+b1)
prints the date in latin
horae (071~svn537-2.1) [contrib]
interactive graphical processing and analysis of EXAFS data
hpcc (1.5.0-1+b1)
HPC Challenge benchmark
htcondor (8.6.8~dfsg.1-2+b1)
distributed workload management system
hyphy-common (2.3.13+dfsg-1)
Hypothesis testing using Phylogenies (common files)
hyphy-mpi (2.3.13+dfsg-1)
Hypothesis testing using Phylogenies (MPI version)
hyphy-pt (2.3.13+dfsg-1)
Hypothesis testing using Phylogenies (pthreads version)
idba (1.1.3-2+b1 [mips64el], 1.1.3-2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
iterative De Bruijn Graph short read assemblers
ifeffit (2:1.2.11d-10.2+b1) [contrib]
Interactive XAFS analysis program
ifrit (4.1.2-6)
powerful tool for visualizing 3-dimensional data sets
imagej (1.51q-1)
Image processing program with a focus on microscopy images
imagevis3d (3.1.0-6)
desktop volume rendering application for large data
imview (1.1.9h-1)
Image viewing and analysis application
indelible (1.03-3)
powerful and flexible simulator of biological evolution
infernal (1.1.2-2)
inference of RNA secondary structural alignments
inhomog (0.1.7.1-1)
kinematical backreaction and average scale factor evolution
ipig (0.0.r5-3)
integrating PSMs into genome browser visualisations
iqtree (1.6.5+dfsg-1)
efficient phylogenetic software by maximum likelihood
iraf (2.16.1+2018.06.15-4)
Image Reduction and Analysis Facility
iraf-dev (2.16.1+2018.06.15-4)
Image Reduction and Analysis Facility (development files)
iraf-noao (2.16.1+2018.06.15-4)
IRAF NOAO data reduction package
iraf-noao-dev (2.16.1+2018.06.15-4)
IRAF NOAO data reduction package (development files)
iraf-rvsao (2.8.3-1)
IRAF package to obtain radial velocities from spectra
iraf-wcstools (3.9.5-3)
Handle the WCS of a FITS image (IRAF package)
irstlm (6.00.05-2)
IRST Language Modeling Toolkit
ismrmrd-schema (1.3.3-1)
schema for ISMRMRD
ismrmrd-tools (1.3.3-1+b1)
command-line tools for ISMRMRD
itksnap (3.6.0-2)
semi-automatic segmentation of structures in 3D images
iva (1.0.9+ds-5)
iterative virus sequence assembler
jaligner (1.0+dfsg-4)
Smith-Waterman algorithm with Gotoh's improvement
jblas (1.2.4-2)
fast linear algebra library for Java
jellyfish (2.2.8-3+b1)
count k-mers in DNA sequences
jellyfish-examples (2.2.8-3+b1)
count k-mers in DNA sequences (examples for testing)
jellyfish1 (1.1.11-3)
count k-mers in DNA sequences
jemboss (6.6.0+dfsg-6)
graphical user interface to EMBOSS
jmodeltest (2.1.10+dfsg-6)
HPC selection of models of nucleotide substitution
jmol (14.6.4+2016.11.05+dfsg1-3.1)
Molecular Viewer
jsamp (1.3.5-1)
Java Simple Application Messaging Protocol tool for VO
jupyter-notebook (5.4.1-1)
Jupyter interactive notebook
kalign (1:2.03+20110620-4)
Global and progressive multiple sequence alignment
kalzium (4:17.08.3-1+b1)
periodic table and chemistry tools
kalzium-data (4:17.08.3-1)
data files for Kalzium
khmer (2.1.2+dfsg-3+b1)
in-memory DNA sequence kmer counting, filtering & graph traversal
khmer-common (2.1.2+dfsg-3)
common files for the khmer project tools
kineticstools (0.6.1+20161222-1)
detection of DNA modifications
kineticstools-data (0.6.1+20161222-1)
detection of DNA modifications -- data files
king-probe (2.13.110909-2)
Evaluate and visualize protein interatomic packing
kissplice (2.4.0-p1-3)
Detection of various kinds of polymorphisms in RNA-seq data
klustakwik (2.0.1-1+b2)
automatic sorting of the samples (spikes) into clusters
kmc (2.3+dfsg-6)
count kmers in genomic sequences
kmer (0~20150903+r2013-3)
suite of tools for DNA sequence analysis
kraken (1.1-2)
assigning taxonomic labels to short DNA sequences
kst (2.0.8-2)
scientific data plotting tool
kstars (5:2.9.6-1)
desktop planetarium, observation planning and telescope control
kstars-data (5:2.9.6-1)
data files for KStars desktop planetarium
kstars-data-extra-tycho2 (1.1r1-9.1) [non-free]
Tycho-2 star catalog for KStars
kxterm (20061220+dfsg3-4.3+b2 [mips64el], 20061220+dfsg3-4.3+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
CERNLIB data analysis suite - KUIP terminal emulator
lamarc (2.1.10.1+dfsg-2)
Likelihood Analysis with Metropolis Algorithm using Random Coalescence
lambda-align (1.0.3-3)
Local Aligner for Massive Biological DatA
lammps (0~20180510.gitaa1d815fe-4)
Molecular Dynamics Simulator
last-align (938-1)
genome-scale comparison of biological sequences
lbt (1.2.2-6)
converts from LTL formulas to Büchi automata
leaff (0~20150903+r2013-3)
biological sequence library utilities and applications
lefse (1.0.8-1)
determine features of organisms, clades, taxonomic units, genes
lhapdf-pdfsets-minimal (5.9.1-6)
Minimal PDF Sets of LHAPDF
libadios-bin (1.13.1-4)
ADIOS Adaptable IO system for simulations - binaries
libadios-examples (1.13.1-4)
Examples for the ADIOS Adaptable IO system
libbio-tools-phylo-paml-perl (1.7.3-2)
Bioperl interface to the PAML suite
libcg3-1 (1.0.0~r12254-1+b1)
Runtime for CG-3
libeccodes-data (2.8.0-2)
GRIB and BUFR enecoding/encoding software library - data
libgeotiff-epsg (1.4.2-1) [non-free]
GeoTIFF library -- EPSG Geodetic Parameter Dataset
libghemical-data (3.0.0-4.2)
Molecular Modelling Library (data files)
libgnuradio-fcdproplus3.7.11 (3.7.25.4b6464b-5+b2)
Funcube Dongle Pro Plus controller for GNU Radio (runtime)
libgtkdatabox-0.9.3-0-glade (1:0.9.3.0+dfsg-3)
Gtk+ library to display large amounts of numerical data (glade API)
libgtkdatabox-0.9.3-0-libglade (1:0.9.3.0+dfsg-3)
Gtk+ library to display large amounts of numerical data (glade lib)
libhdf5-jni (1.10.0-patch1+docs-4+b2 [mips64el], 1.10.0-patch1+docs-4+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
native library used by libhdf5-java
libhfstospell9 (0.4.5~r343-2.1+b2 [mips64el], 0.4.5~r343-2.1+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
HFST spell checker runtime libraries
liblas-bin (1.8.1-7)
ASPRS LiDAR data translation toolset
liblemon-utils (1.3.1+dfsg-1+b2)
Library for Efficient Modeling and Optimization in Networks (utilities)
liblinear-tools (2.1.0+dfsg-2)
Standalone applications for LIBLINEAR
libmstoolkit-tools (82-6)
libraries for manipulating mass spectrometry data - tools
libncarg-bin (6.4.0-10)
NCAR command-language library - development tools
libncarg-data (6.4.0-10)
NCAR command-language library - Data
libngram-tools (1.3.2-3)
OpenGRM n-gram Language Modeling toolkit
libocas-tools (0.97+dfsg-3)
Standalone applications implementing the OCAS solver
libopengm-bin (2.3.6+20160905-1+b2)
command line tools for OpenGM
libotb (6.6.0+dfsg-1)
ORFEO Toolbox library metapackage
libotb-apps (6.6.0+dfsg-1)
Plugins for ORFEO Toolbox applications
libpwiz-tools (3.0.10827-4)
ProteoWizard command line tools
libqgis-customwidgets (2.18.21+dfsg-2)
QGIS custom widgets for Qt Designer
libsilo-bin (4.10.2.real-4)
Utilities to manipulate libsilo files
libssm-bin (1.4.0-1)
macromolecular superposition library - binaries
libvcflib-tools (1.0.0~rc1+dfsg1-6)
C++ library for parsing and manipulating VCF files (tools)
libxy-bin (1.3-1.1+b1)
xylib - utilities
libyade (2018.02b-4)
Platform for discrete element modeling. Libraries
liggghts (3.7.0+repack1-1+b1 [amd64, arm64, armhf, i386, mips64el, ppc64el, s390x], 3.7.0+repack1-1 [armel])
Open Source DEM Particle Simulation Software.
limereg (1.4.1-3+b1)
Lightweight Image Registration
linguider (4.1.1-1)
Astronomical autoguiding program for Linux
litl-tools (0.1.9-2)
Lightweight Trace Library - tools
logcentral (2.7-1.1+b2)
Logging service for distributed applications
logcentral-tools (2.7-1.1+b2)
Logging service for distributed applications
logol (1.7.8-2)
Pattern matching tool using Logol language
logol-bin (1.7.8-2)
Pattern matching tool using Logol language
loki (2.4.7.4-7)
MCMC linkage analysis on general pedigrees
looptools (2.8-1+b3 [mips64el], 2.8-1+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Integral Evaluator of One-loop Feynman Diagram
lorene (0.0.0~cvs20161116+dfsg-1)
framework for numerical relativity
lorene-codes-src (0.0.0~cvs20161116+dfsg-1)
source files of LORENE-based codes
ltrsift (1.0.2-8)
postprocessing and classification of LTR retrotransposons
lttoolbox-dev (3.4.2-2)
Development tools and library for lttoolbox
lutefisk (1.0.7+dfsg-4+b1)
de novo interpretation of peptide CID spectra
lxi-tools (1.15-1)
LAN eXtensions for Instrumentation (LXI) software interface
macs (2.1.1.20160309-2)
Model-based Analysis of ChIP-Seq on short reads sequencers
macsyfinder (1.0.5-1)
detection of macromolecular systems in protein datasets
maffilter (1.3.0+dfsg-1)
process genome alignment in the Multiple Alignment Format
maffilter-examples (1.3.0+dfsg-1)
process genome alignment in the Multiple Alignment Format (example data)
mafft (7.402-1)
Multiple alignment program for amino acid or nucleotide sequences
mapdamage (2.0.8+dfsg-1)
tracking and quantifying damage patterns in ancient DNA sequences
mapsembler2 (2.2.4+dfsg-1)
bioinformatics targeted assembly software
maq (0.7.1-7)
maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview (0.2.5-8)
graphical read alignment viewer for short gene sequences
mash (2.0-2)
fast genome and metagenome distance estimation using MinHash
massxpert (5.3.3-1)
transitional package
massxpert-data (5.3.3-1)
transitional package
matlab-gdf (0.1.2-2.1) [contrib]
IO library for the GDF -- Matlab interface
maude (2.7-2+b2)
high-performance logical framework
mauve-aligner (2.4.0+4736-1)
multiple genome alignment
mayavi2 (4.5.0-1)
scientific visualization package for 2-D and 3-D data
mbt (3.2.16-1+b1)
memory-based tagger-generator and tagger
mbtserver (0.11-1+b1)
Server extensions for the MBT tagger
meep (1.3-4+b3 [mips64el], 1.3-4+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
software package for FDTD simulation
meep-lam4 (1.3-2+b3 [mips64el], 1.3-2+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpi-default (1.3-3+b6 [mips64el, s390x], 1.3-3+b5 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el])
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpich2 (1.3-4+b3 [mips64el], 1.3-4+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
software package for FDTD simulation, parallel (OpenMPI) version
meep-openmpi (1.3-3+b6 [mips64el], 1.3-3+b5 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el], 1.3-3+b4 [s390x])
software package for FDTD simulation, parallel (OpenMPI) version
melting (4.3.1+dfsg-3)
compute the melting temperature of nucleic acid duplex
melting-gui (4.3.1+dfsg-3)
graphical interface to compute the melting temperature of nucleic acid duplex
merkaartor (0.18.3+ds-3+b2)
map editor for OpenStreetMap.org
meryl (0~20150903+r2013-3)
in- and out-of-core kmer counting and utilities
metaphlan2 (2.7.6-1)
Metagenomic Phylogenetic Analysis
metaphlan2-data (2.6.0+ds-2)
data package for Metagenomic Phylogenetic Analysis
metastudent (2.0.1-5)
predictor of Gene Ontology terms from protein sequence
metastudent-data (2.0.1-3)
predictor of Gene Ontology terms from protein sequence - data files
metastudent-data-2 (1.0.0-3)
predictor of Gene Ontology terms from protein sequence - data #2
metview (5.0.3-1)
Interactive data visualization and analysis environment,
metview-data (5.0.3-1)
Data needed for the Metview data analysis environment
mgltools-bhtree (1.5.7-2) [non-free]
Bhtree library extension module
mgltools-cadd (1.5.7-3) [non-free]
Computer Aided Drug Discovery (CADD) Pipeline
mgltools-cmolkit (1.5.7~rc1+cvs.20140424-2) [non-free]
Python classes to interpret trajectories of Gromacs
mgltools-dejavu (1.5.7-2) [non-free]
visualization of 3D geometry using the OpenGL with Python
mgltools-geomutils (1.5.7-2) [non-free]
Python library for geometric analyses
mgltools-mglutil (1.5.7-3) [non-free]
Molecular Graphics Laboratory utility collection
mgltools-molkit (1.5.7-2) [non-free]
Python classes to read and manipulate molecules
mgltools-networkeditor (1.5.7-3) [non-free]
Python GUI library for the editing of networks
mgltools-opengltk (1.5.7-2) [non-free]
Opengltk Python extension
mgltools-pyautodock (1.5.7-2) [non-free]
Python implementation of autodock
mgltools-pybabel (1.5.7-2) [non-free]
molecular structure file access and interpretation
mgltools-pyglf (1.5.7-2) [non-free]
GLF library Python extension to write text in OpenGL
mgltools-scenario2 (1.5.7-2) [non-free]
Python-based viewer of molecular structures
mgltools-sff (1.5.6~rc3~cvs.20120206-1) [non-free]
Simple Force Field for Python
mgltools-support (1.5.7-2) [non-free]
Update mechanism of MGLTools
mgltools-symserv (1.5.7-2) [non-free]
Symetry server
mgltools-utpackages (1.5.7-2) [non-free]
UT Austin software Python extensions
mgltools-viewerframework (1.5.7-2) [non-free]
ViewerFramework supports building visualization applications
mgltools-vision (1.5.7+dfsg-1) [non-free]
Python-based Visual Programming Environment
mgltools-visionlibraries (1.5.7-2) [non-free]
Extensions for Python-based Visual Programming Environment
mgltools-volume (1.5.7-2) [non-free]
Volume rendering Python package
mgltools-webservices (1.5.7-2) [non-free]
webservices for components of autodocktools
mhap (2.1.3+dfsg-1)
locality-sensitive hashing to detect long-read overlaps
mia-doctools (2.4.6-2)
Helper scripts for run-time document creation
mia-tools (2.4.6-2+b1)
Command line tools for gray scale image processing
mia-viewit (1.0.5-1)
Viewer program for 3D data sets created by using MIA
mialmpick (0.2.14-1)
Tools for landmark picking in 3D volume data sets
microbegps (1.0.0-3)
explorative taxonomic profiling tool for metagenomic data
microbiomeutil (20101212+dfsg1-2)
Microbiome Analysis Utilities
microbiomeutil-data (20101212+dfsg1-2)
Reference 16S sequences and NAST-alignments used by microbiomeutil tools
microhope (4.4.3+dfsg-1)
hardware & software framework to learn microcontrollers
minc-tools (2.3.00+dfsg-2)
MNI medical image format tools
minia (1.6906-2)
short-read biological sequence assembler
miniasm (0.2+dfsg-3)
ultrafast de novo assembler for long noisy DNA sequencing reads
minimap (0.2-3+b1)
tool for approximate mapping of long biosequences such as DNA reads
minisat (1:2.2.1-5+b3)
Fast and lightweight SAT solver
minisat+ (1.0-4)
solver for pseudo-Boolean constraints
minisat2 (1:2.2.1-5+b3)
Transitional package for minisat
minisat2
virtual package provided by minisat
mipe (1.1-6)
Tools to store PCR-derived data
mira-assembler (4.9.6-3)
Whole Genome Shotgun and EST Sequence Assembler
mira-rfam-12s-rrna (4.9.6-3)
extract of RFAM 12 rRNA database
missfits (2.8.0-1+b1)
Basic maintenance and packaging tasks on FITS files
mlv-smile (1.47-5)
Find statistically significant patterns in sequences
mmass (5.5.0-5)
Mass spectrometry tool for proteomics
mmass-modules (5.5.0-5)
Mass spectrometry tool for proteomics - extension modules
mobyle (1.5.5+dfsg-5)
Web portal that provides web forms for command-line software
mobyle-programs (5.1.2-2)
program descriptions for the mobyle portal
mobyle-tutorials (1.5.0-3)
program tutorials for the mobyle portal
mobyle-utils (1.5.5+dfsg-5)
binary tools used by Mobyle
mocassin (2.02.72-2+b2 [mips64el], 2.02.72-2+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
MOnte CArlo SimulationS of Ionised Nebulae
mocassin-benchmarks (2.02.72-2)
benchmarks for the photoionisation code MOCASSIN
mocassin-data (2.02.72-2)
atomic and optical data for the photoionisation code MOCASSIN
mocassin-examples (2.02.72-2)
Examples for the photoionisation code MOCASSIN
mona (1.4-17-1+b1)
theorem prover based on automata
montage (5.0+dfsg-1)
Toolkit for assembling FITS images into mosaics
montage-gridtools (5.0+dfsg-1)
Create files to run montage on the grid
montecarlo-base (20061220+dfsg3-3.1)
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (20061220+dfsg3-3.1)
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.15-6+b3 [mips64el], 1.15-6+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Semi-empirical Quantum Chemistry Library (binaries)
morse-simulator (1.4-3)
Multi-OpenRobot Simulation Engine
morse-simulator-data (1.4-3)
Multi-OpenRobot Simulation Engine
mothur (1.40.5-1)
sequence analysis suite for research on microbiota
mothur-mpi (1.40.5-1)
mpi-enabled binary for mothur
mpb (1.5-3+b1)
MIT Photonic-Bands
mpb-mpi (1.5-3+b1)
MIT Photonic-Bands, parallel (mpich) version
mpb-scm (1.5-3)
MIT Photonic-Bands initialisation files
mpgrafic (0.3.15-1+b2 [mips64el], 0.3.15-1+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
MPI version of N-body initial conditions grafic package
mpqc (2.3.1-18+b3 [mips64el], 2.3.1-18+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Massively Parallel Quantum Chemistry Program
mpqc-openmpi (2.3.1-18)
Massively Parallel Quantum Chemistry Program (OpenMPI transitional package)
mpqc-support (2.3.1-18+b3 [mips64el], 2.3.1-18+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Massively Parallel Quantum Chemistry Program (support tools)
mpqc3 (0.0~git20170114-4+b2 [amd64, arm64, mips64el, ppc64el], 0.0~git20170114-4 [i386])
Massively Parallel Quantum Chemistry Program
mpqc3-data (0.0~git20170114-4)
Massively Parallel Quantum Chemistry Program (data files)
mptp (0.2.4-1)
single-locus species delimitation
mrbayes (3.2.6+dfsg-2+b1)
Bayesian Inference of Phylogeny
mrbayes-mpi (3.2.6+dfsg-2+b1)
Bayesian Inference of Phylogeny - mpi version
mriconvert (1:2.1.0-2)
medical image file conversion utility
mricron (0.20140804.1~dfsg.1-2+b1)
magnetic resonance image conversion, viewing and analysis
mricron-data (0.20140804.1~dfsg.1-2)
data files for MRIcron
mrpt-apps (1:1.5.6-1)
Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-common (1:1.5.6-1)
Mobile Robot Programming Toolkit - Example datasets and files
mrs (6.0.5+dfsg-6)
Information Retrieval System for Biomedical databanks
mrtrix (0.2.12-2.1)
diffusion-weighted MRI white matter tractography
mseed2sac (2.2+ds1-3)
Convert MiniSEED time series data to SAC
mssstest (3.0-6) [non-free]
Normalisation of disease scores for patients with Multiple Sclerosis
msxpertsuite (5.3.3-1)
mass spectrometry software suite - executable files
msxpertsuite-data (5.3.3-1)
mass spectrometry software suite - arch-indep data
mummer (3.23+dfsg-4)
Efficient sequence alignment of full genomes
munipack (0.5.10-1)
Astronomical photometry software package
munipack-cli (0.5.10-1)
Command line interface of Munipack
munipack-core (0.5.10-1)
Core routines of Munipack
munipack-gui (0.5.10-1)
Graphical user interface of Munipack
murasaki (1.68.6-6+b5)
homology detection tool across multiple large genomes
murasaki-common (1.68.6-6)
homology detection tool across multiple large genomes (common files)
murasaki-mpi (1.68.6-6+b5)
homology detection tool across multiple large genomes (MPI-version)
muscle (1:3.8.31+dfsg-3+b1 [mips64el], 1:3.8.31+dfsg-3 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Multiple alignment program of protein sequences
music-bin (1.0.7-4+b1)
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.3-3)
multiple structural alignment of proteins
mustang-testdata (3.2.3-3)
multiple structural alignment of proteins, test data
nanook (1.26+dfsg-1)
pre- and post-alignment analysis of nanopore sequencing data
nanopolish (0.9.0-1)
consensus caller for nanopore sequencing data
nast-ier (20101212+dfsg1-2)
NAST-based DNA alignment tool
nastran (0.1.95-1+b1) [non-free]
NASA Structural Analysis System
nautic (1.5-4)
computation of observer position in astro-navigation
ncbi-blast+ (2.7.1-1+b1)
next generation suite of BLAST sequence search tools
ncbi-blast+-legacy (2.7.1-1)
NCBI Blast legacy call script
ncbi-entrez-direct (7.40.20170928+ds-1)
NCBI Entrez utilities on the command line
ncbi-epcr (2.3.12-1-5)
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20170106-4)
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-seg (0.0.20000620-4)
tool to mask segments of low compositional complexity in amino acid sequences
ncbi-tools-bin (6.1.20170106-4)
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20170106-4)
NCBI libraries for biology applications (X-based utilities)
ncl-ncarg (6.4.0-10)
NCAR Command Language and NCAR graphics
ncl-tools (2.1.18+dfsg-2+b1)
tools to deal with NEXUS files
nco (4.7.5-1)
Command-line operators to analyze netCDF files
ncoils (2002-6)
coiled coil secondary structure prediction
ncview (2.1.8+ds-1+b1)
X11 visual browser for NetCDF format files
neat (2.0-2+b2 [mips64el], 2.0-2+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Nebular Empirical Analysis Tool
neobio (0.0.20030929-3)
computes alignments of amino acid and nucleotide sequences
netcdf-bin (1:4.6.1-1)
Programs for reading and writing NetCDF files
neurodebian (0.37.6)
neuroscience-oriented distribution - repository configuration
neurodebian-archive-keyring (0.37.6)
neuroscience-oriented distribution - GnuPG archive keys
neurodebian-desktop (0.37.6)
neuroscience-oriented distribution - desktop integration
neurodebian-dev (0.37.6)
neuroscience-oriented distribution - development tools
neurodebian-popularity-contest (0.37.6)
neuroscience-oriented distribution - popcon integration
neuron (7.5-1+b2)
Simulation environment for computational models of neurons
neuron-dev (7.5-1+b2)
Neuron simulation environment - Development files
nifti2dicom (0.4.11-1+b4)
convert 3D medical images to DICOM 2D series
nifti2dicom-data (0.4.11-1)
data files for nifti2dicom
njplot (2.4-7)
phylogenetic tree drawing program
norsnet (1.0.17-3)
tool to identify unstructured loops in proteins
norsp (1.0.6-3)
predictor of non-regular secondary structure
numdiff (5.9.0-1)
Compare similar files with numeric fields
nutsqlite (2.0.4-1)
Dietary nutrition analysis software
oar-common (2.5.7-3)
OAR batch scheduler common package
oar-node (2.5.7-3)
OAR batch scheduler node package
oar-server (2.5.7-3)
OAR batch scheduler server package
oar-server-mysql (2.5.7-3)
OAR batch scheduler MySQL server backend package
oar-server-pgsql (2.5.7-3)
OAR batch scheduler PostgreSQL server backend package
oar-user (2.5.7-3)
OAR batch scheduler user package
oar-user-mysql (2.5.7-3)
OAR batch scheduler MySQL user backend package
oar-user-pgsql (2.5.7-3)
OAR batch scheduler PostgreSQL user backend package
oar-web-status (2.5.7-3)
OAR batch scheduler visualization tool package
obdgpslogger (0.16-1.3+b2)
suite of tools to log OBDII and GPS data
occt-draw (7.3.0+dfsg1-3)
Open CASCADE Technology command interpreter and graphical test system
oce-draw (0.18.2-3)
OpenCASCADE Community Edition CAE platform shared library
octave-bart (0.4.03-2)
Octave bindings for BART
octave-biosig (1.3.0-2.3+b1)
Octave bindings for BioSig library
octave-gdf (0.1.2-2.1+b1)
IO library for the GDF -- Octave interface
octave-lhapdf (5.9.1-6+b1)
Octave Bindings for LHAPDF
octave-psychtoolbox-3 (3.0.14.20180526.dfsg1-1+b1)
toolbox for vision research -- Octave bindings
octomap-tools (1.8.1+dfsg-1)
Tools for 3D occupancy grid mapping
octovis (1.8.1+dfsg-1)
Visualization tool for OctoMap
odil (0.9.2-1)
C++11 library for the DICOM standard (application)
ogdi-bin (3.2.1+ds-3)
Open Geographic Datastore Interface Library -- utilities
openbabel (2.4.1+dfsg-2)
Chemical toolbox utilities (cli)
openbabel-gui (2.4.1+dfsg-2)
Chemical toolbox utilities (graphical user interface)
opencaster (3.2.2+dfsg-1.1+b1)
MPEG2 transport stream data generator and packet manipulator
openfoam (4.1+dfsg1-2+b1)
Set of programs for Computational Fluid Dynamics (CFD). Binaries
openfoam-examples (4.1+dfsg1-2)
Set of programs for Computational Fluid Dynamics (CFD). Examples
openmx (3.8.4+dfsg1-1)
package for nano-scale material simulations
openmx-data (3.8.4+dfsg1-1)
package for nano-scale material simulations (data)
openrocket (15.03)
Model Rocket Simulator
openturns-examples (1.10-5)
examples of OpenTURNS functionalities
openturns-validation (1.10-5)
validation files for OpenTURNS
openuniverse (1.0beta3.1+dfsg-6)
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-6)
3D Universe Simulator data files
optgeo (2.25-1)
simulator for geometrical optics
opticalraytracer (3.2-1.1)
Virtual lens design workshop
origami (1.2.7+really0.7.4-1.1)
command-line management tool for Folding @ Home clients
orthanc (1.3.2+dfsg-2+b1)
Lightweight, RESTful DICOM server for medical imaging
orthanc-dicomweb (0.5+dfsg-2)
Plugin to extend Orthanc with support of WADO and DICOMweb
orthanc-imagej (1.1+dfsg-2)
ImageJ plugin to import images from Orthanc
orthanc-postgresql (2.1-2)
Plugins to use PostgreSQL as a database back-end to Orthanc
orthanc-webviewer (2.4-2)
Web viewer of medical images for Orthanc
orthanc-wsi (0.5-2+b1)
Whole-slide imaging support for Orthanc (digital pathology)
ossim-core (2.4.1-1)
OSSIM core utilities
otb-bin (6.6.0+dfsg-1)
ORFEO Toolbox command line applications
otb-bin-qt (6.6.0+dfsg-1)
ORFEO Toolbox graphical user interface applications
otb-testdriver (6.6.0+dfsg-1)
ORFEO Toolbox library - OTBTestDriver
otf-trace (1.12.5+dfsg-3)
Open Trace Format support library - development files
paje.app (1.98-1+b6)
generic visualization tool (Gantt chart and more)
pal2nal (14.1-1)
converts proteins to genomic DNA alignment
paleomix (1.2.13.2-1)
pipelines and tools for the processing of ancient and modern HTS data
paml (4.9h+dfsg-1)
Phylogenetic Analysis by Maximum Likelihood (PAML)
paraclu (9-2)
Parametric clustering of genomic and transcriptomic features
parafly (0.0.2013.01.21-3+b1)
parallel command processing using OpenMP
paraview (5.4.1+dfsg4-3)
Parallel Visualization Application
parsinsert (1.04-3+b1 [mips64el], 1.04-3 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Parsimonious Insertion of unclassified sequences into phylogenetic trees
parsinsert-testdata (1.04-3)
Test data for parsinsert
parsnp (1.2+dfsg-3)
rapid core genome multi-alignment
patman (1.2.2+dfsg-4)
rapid alignment of short sequences to large databases
paw (1:2.14.04.dfsg.2-9.1+b1)
Physics Analysis Workstation - a graphical analysis program
paw++ (1:2.14.04.dfsg.2-9.1+b1)
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (1:2.14.04.dfsg.2-9.1)
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-9.1)
Physics Analysis Workstation examples and tests
pbsim (1.0.3-3)
simulator for PacBio sequencing reads
pdb2pqr (2.1.1+dfsg-2)
Preparation of protein structures for electrostatics calculations
pegasus-wms (4.4.0+dfsg-7)
Scientific workflow management system for HTCondor
perlprimer (1.2.3-1)
Graphical design of primers for PCR
perm (0.4.0-3+b1 [mips64el], 0.4.0-3 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
efficient mapping of short reads with periodic spaced seeds
pftools (3+dfsg-2+b1)
build and search protein and DNA generalized profiles
phast (1.4+dfsg-1)
phylogenetic analysis with space/time models
phipack (0.0.20160614-2)
PHI test and other tests of recombination
phybin (0.3-2)
binning/clustering newick trees by topology
phylip (1:3.696+dfsg-5)
package of programs for inferring phylogenies
phyml (3:3.3.20180621-2)
Phylogenetic estimation using Maximum Likelihood
physamp (1.1.0-1)
sample sequence alignment corresponding to phylogeny
phyutility (2.7.3+dfsg-1)
simple analyses or modifications on both phylogenetic trees and data matrices
picard-tools (2.8.1+dfsg-4)
Command line tools to manipulate SAM and BAM files
picosat (960-1+b2)
SAT solver with proof and core support
piler (0~20140707-2)
genomic repeat analysis
pirs (2.0.2+dfsg-6)
Profile based Illumina pair-end Reads Simulator
pirs-examples (2.0.2+dfsg-6)
profile basd Illumina pair-end Reads Simulator (example data)
pirs-profiles (2.0.2+dfsg-6)
profile basd Illumina pair-end Reads Simulator (profile data)
pkg-r-autopkgtest (20180713)
Script for the automatic testing of R packages
pktools (2.6.7.3+ds-2+b1)
GDAL add-on tools to perform useful raster processing
placnet (1.03-3)
Plasmid Constellation Network project
planets (0.1.13-19)
Gravitation simulation of planetary bodies
plast (2.3.2+dfsg-1)
Parallel Local Sequence Alignment Search Tool
plast-example (2.3.2+dfsg-1)
Parallel Local Sequence Alignment Search Tool (example data)
plastimatch (1.7.0+dfsg.1-1)
medical image reconstruction and registration
plink (1.07+dfsg-1)
whole-genome association analysis toolset
plink1.9 (1.90~b6.2-180612-1)
whole-genome association analysis toolset
pnetcdf-bin (1.9.0-8)
Programs for reading and writing parallel NetCDF files
poa (2.0+20060928-6)
Partial Order Alignment for multiple sequence alignment
populations (1.2.33+svn0120106+dfsg-1)
population genetic software
poretools (0.6.0+dfsg-2)
toolkit for nanopore nucleotide sequencing data
poretools-data (0.6.0+dfsg-2)
toolkit for nanopore nucleotide sequencing data -- sample datasets
pp-popularity-contest (1.0.6-3)
PredictProtein popularity contest
pprepair (0.0~20170614-dd91a21-1+b5)
planar partition repair tool
praat (6.0.40-1)
program for speech analysis and synthesis
prank (0.0.170427+dfsg-2)
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
predictnls (1.0.20-4)
prediction and analysis of protein nuclear localization signals
predictprotein (1.1.07-3)
suite of protein sequence analysis tools
prepair (0.7.1-1+b5)
polygon repair tool
prepair-data (0.7.1-1)
polygon repair tool -- example data
prime-phylo (1.0.11-6)
bayesian estimation of gene trees taking the species tree into account
primer3 (2.4.0-2)
tool to design flanking oligo nucleotides for DNA amplification
primer3-examples (2.4.0-2)
tool to design flanking oligo nucleotides for DNA amplification (examples)
proalign (0.603-3)
Probabilistic multiple alignment program
probabel (0.4.5-5)
Toolset for Genome-Wide Association Analysis
probabel-examples (0.4.5-5)
Example files for ProbABEL
probalign (1.4-7)
multiple sequence alignment using partition function posterior probabilities
probcons (1.12-12)
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-12)
Extra programs from the probcons package
proda (1.0-11)
multiple alignment of protein sequences
prodigal (1:2.6.3-4)
Microbial (bacterial and archaeal) gene finding program
profbval (1.0.22-5)
predictor of flexible/rigid protein residues from sequence
profisis (1.0.11-4)
prediction of protein-protein interaction sites from sequence
profnet-bval (1.0.22-5)
neural network architecture for profbval
profnet-chop (1.0.22-5)
neural network architecture for profchop
profnet-con (1.0.22-5)
neural network architecture for profcon
profnet-isis (1.0.22-5)
neural network architecture for profisis
profnet-md (1.0.22-5)
neural network architecture for metadisorder
profnet-norsnet (1.0.22-5)
neural network architecture for norsnet
profnet-prof (1.0.22-5)
neural network architecture for profacc
profnet-snapfun (1.0.22-5)
neural network architecture for snapfun
profphd (1.0.42-3)
secondary structure and solvent accessibility predictor
profphd-net (1.0.22-5)
neural network architecture for profphd
profphd-utils (1.0.10-4)
profphd helper utilities convert_seq and filter_hssp
proftmb (1.1.12-7)
per-residue prediction of bacterial transmembrane beta barrels
progressivemauve (1.2.0+4713+dfsg-1)
multiple genome alignment algorithms
proj-bin (5.1.0-1)
Cartographic projection library (tools)
proj-rdnap (2008-8) [non-free]
RDNAP grid correction files for PROJ
proteinortho (5.16+dfsg-1)
Detection of (Co-)orthologs in large-scale protein analysis
prottest (3.4.2+dfsg-3)
selection of best-fit models of protein evolution
pscan-chip (1.1-1)
ChIP-based identifcation of TF binding sites
pscan-chip-data (1.1-1)
auxiliary data for PScan-ChIP
pscan-tfbs (1.2.2-2)
search for transcription factor binding sites
psfex (3.17.1+dfsg-4)
Point Spread Function model extractor
psi3 (3.4.0-6+b4 [mips64el], 3.4.0-6+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Quantum Chemical Program Suite
psortb (3.0.5+dfsg-2)
bacterial localization prediction tool
psychtoolbox-3-common (3.0.14.20180526.dfsg1-1)
toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-lib (3.0.14.20180526.dfsg1-1+b1)
toolbox for vision research -- arch-specific parts
purify (2.0.0-2)
Collection of routines for radio interferometric imaging
pyfai (0.15.0+dfsg1-1)
Fast Azimuthal Integration scripts
pyfr (1.5.0-2)
flux reconstruction in Python
pymca (5.2.2+dfsg-2)
Applications and toolkit for X-ray fluorescence analysis -- scripts
pymca-data (5.2.2+dfsg-2)
Architecture independent data files for PyMca
pymoctool (0.5.0-2)
Python Multi-Order Coverage maps tool for Virtual Observatory
pymol (2.1.0+dfsg-3)
Molecular Graphics System
pymol-data (2.1.0+dfsg-3)
data files for PyMOL
pysatellites (2.5-1)
simulates the launching of satellites
python-drizzle-testdata (1.11-1)
Dithered image combination for Python (Test data)
python-escript (5.1-6)
Escript/Finley finite elements Python2 system (with OpenMP)
python-escript-doc (5.1-6)
Documentation for Escript/Finley
python-escript-mpi (5.1-6)
Escript/Finley finite elements Python2 system (OpenMP + MPI)
python-pybigwig (0.3.11-1)
Python 2 module for quick access to bigBed and bigWig files
python-pynlpl (1.1.2-1)
PyNLPl is a library for Natural Language Processing (Python 2 version)
python-shogun (3.2.0-5.2)
Large Scale Machine Learning Toolbox
python3-amp (0.6-3+b1)
Atomistic Machine-learning Package (python 3)
python3-escript (5.1-6)
Escript/Finley finite elements Python3 system (with OpenMP)
python3-escript-mpi (5.1-6)
Escript/Finley finite elements Python3 system (OpenMP + MPI)
python3-gfapy (1.0.0+dfsg-2)
flexible and extensible software library for handling sequence graphs
python3-pybigwig (0.3.11-1)
Python 3 module for quick access to bigBed and bigWig files
python3-pynlpl (1.1.2-1)
PyNLPl is a library for Natural Language Processing (Python 3 version)
pyzo (4.4.3-1)
interactive editor for scientific Python
qcumber (1.0.14+dfsg-1)
quality control of genomic sequences
qfits-tools (6.2.0-8+b2)
FITS manipulation tools
qfitsview (3.3+p1+dfsg-2+b2 [mips64el], 3.3+p1+dfsg-2+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
FITS file viewer based on DPUSER
qgis (2.18.21+dfsg-2)
Geographic Information System (GIS)
qgis-api-doc (2.18.21+dfsg-2)
QGIS API documentation
qgis-common (2.18.21+dfsg-2)
QGIS - architecture-independent data
qgis-plugin-grass (2.18.21+dfsg-2)
GRASS plugin for QGIS
qgis-plugin-grass-common (2.18.21+dfsg-2)
GRASS plugin for QGIS - architecture-independent data
qgis-provider-grass (2.18.21+dfsg-2)
GRASS provider for QGIS
qgis-providers (2.18.21+dfsg-2)
collection of data providers to QGIS
qgis-providers-common (2.18.21+dfsg-2)
collection of data providers to QGIS - architecture-independent files
qgis-server (2.18.21+dfsg-2)
QGIS server providing various OGC services
qmapshack (1.11.1-1+b1)
GPS mapping (GeoTiff and vector) and GPSr management
qmc (0.94-3.1)
Quine McClusky Simplification Tool
qnifti2dicom (0.4.11-1+b4)
convert 3D medical images to DICOM 2D series (gui)
qrisk2 (0.1.20150729-2)
cardiovascular disease risk calculator
qthid-fcd-controller (4.1-3+b1)
Funcube Dongle controller
qtltools (1.1+dfsg-2+b1 [mips64el], 1.1+dfsg-2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Tool set for molecular QTL discovery and analysis
quantum-espresso (6.0-3.1+b1)
Electronic-Structure and Ab-Initio Molecular Dynamics Suite
quantum-espresso-data (6.0-3.1)
Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
quorum (1.1.1-1)
QUality Optimized Reads of genomic sequences
qutemol (0.4.1~cvs20081111-9)
interactive visualization of macromolecules
radiant (2.7+dfsg-1)
explore hierarchical metagenomic data with zoomable pie charts
rambo-k (1.21+dfsg-1)
Read Assignment Method Based On K-mers
rapmap (0.5.0+dfsg-3)
rapid sensitive and accurate DNA read mapping via quasi-mapping
rapmap-example-data (0.5.0+dfsg-3)
example data for rapmap - rapid sensitive and accurate DNA read mapping
raster3d (3.0-3-3)
tools for generating images of proteins or other molecules
rate4site (3.0.0-5)
detector of conserved amino-acid sites
rawtran (0.3.8-2+b1)
RAW photo to FITS converter
raxml (8.2.12+dfsg-1)
Randomized Axelerated Maximum Likelihood of phylogenetic trees
ray (2.3.1-6)
de novo genome assemblies of next-gen sequencing data
ray-extra (2.3.1-6)
Scripts and XSL sheets for post-processing for ray
rdp-classifier (2.10.2-2)
extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
readseq (1-13)
Conversion between sequence formats
reapr (1.0.18+dfsg-4)
universal tool for genome assembly evaluation
relion-bin (1.4+dfsg-4)
toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+gui (1.4+dfsg-4)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+mpi (1.4+dfsg-4)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+mpi+gui (1.4+dfsg-4)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
repeatmasker-recon (1.08-4)
finds repeat families from biological sequences
reprof (1.0.1-5)
protein secondary structure and accessibility predictor
rna-star (2.6.0c+dfsg-1)
ultrafast universal RNA-seq aligner
rnahybrid (2.1.2-4)
Fast and effective prediction of microRNA/target duplexes
roary (3.12.0+dfsg-1)
high speed stand alone pan genome pipeline
roguenarok (1.0-1)
versatile and scalable algorithm for rogue taxon identification
rsem (1.3.0+dfsg-2)
RNA-Seq by Expectation-Maximization
rtax (0.984-5)
Classification of sequence reads of 16S ribosomal RNA gene
ruby-rgfa (1.3.1-1)
parse, edit and write GFA format graphs in Ruby
runcircos-gui (0.0+20160403-1)
GUI tool to run circos
sac2mseed (1.12+ds1-3)
Convert SAC waveform data to MiniSEED
saga (2.3.1+dfsg-3+b7)
System for Automated Geoscientific Analyses
saga-common (2.3.1+dfsg-3)
SAGA GIS architecture independent files
saint (2.5.0+dfsg-3)
Significance Analysis of INTeractome
salmon (0.7.2+ds1-3)
wicked-fast transcript quantification from RNA-seq data
sambamba (0.6.7-2)
tools for working with SAM/BAM data
samtools (1.7-2+b1)
processing sequence alignments in SAM and BAM formats
samtools-test (1.7-2)
test files for the samtools package
saods9 (7.6+repack-3)
Image display tool for astronomy
sasview (4.2.0~git20180309-3)
Small Angle Scattering Analysis suite
sat4j (2.3.5-0.3)
Efficient library of SAT solvers in Java
savi (1.5.1-2)
satellite constellation visualisation
scamp (2.0.4+dfsg-1)
Compute astrometric and photometric solutions
science-astronomy (1.7)
Debian Science Astronomy transitional package
science-astronomy-dev (1.7)
Debian Science Astronomy-dev transitional package
science-biology (1.7)
Debian Science Biology packages
science-chemistry (1.7)
Debian Science Chemistry packages
science-config (1.7)
Debian Science Project config package
science-dataacquisition (1.7)
Debian Science data acquisition packages
science-dataacquisition-dev (1.7)
Debian Science data acquisition development packages
science-distributedcomputing (1.7)
Debian Science Distributed Computing packages
science-economics (1.7)
Debian Science Economics packages
science-electronics (1.7)
Debian Science Electronics packages
science-electrophysiology (1.7)
Debian Science packages for Electrophysiology
science-engineering (1.7)
Debian Science Engineering packages
science-engineering-dev (1.7)
Debian Science Engineering-dev packages
science-financial (1.7)
Debian Science financial engineering and computational finance
science-geography (1.7)
Debian Science Geography packages
science-geometry (1.7)
Debian Science geometry packages
science-highenergy-physics (1.7)
Debian Science High Energy Physics packages
science-highenergy-physics-dev (1.7)
Debian Science High Energy Physics development packages
science-imageanalysis (1.7)
Debian Science image analysis packages
science-linguistics (1.7)
Debian Science Linguistics packages
science-logic (1.7)
Debian Science Logic packages
science-machine-learning (1.7)
Debian Science Machine Learning packages
science-mathematics (1.7)
Debian Science Mathematics packages
science-mathematics-dev (1.7)
Debian Science Mathematics-dev packages
science-meteorology (1.7)
Debian Science Meteorology packages
science-meteorology-dev (1.7)
Debian Science Meteorology-dev packages
science-nanoscale-physics (1.7)
Debian Science Nanoscale Physics packages
science-nanoscale-physics-dev (1.7)
Debian Science Nanoscale Physics development packages
science-neuroscience-cognitive (1.7)
Debian Science packages for Cognitive Neuroscience
science-neuroscience-modeling (1.7)
Debian Science packages for modeling of neural systems
science-numericalcomputation (1.7)
Debian Science Numerical Computation packages
science-physics (1.7)
Debian Science Physics packages
science-physics-dev (1.7)
Debian Science Physics-dev packages
science-presentation (1.7)
Debian Science generic tools for presentations
science-psychophysics (1.7)
Debian Science packages for Psychophysics
science-robotics (1.7)
Debian Robotics packages
science-robotics-dev (1.7)
Debian Robotics development packages
science-simulations (1.7)
Debian Science Simulation packages
science-social (1.7)
Debian Science social sciences packages
science-statistics (1.7)
Debian Science Statistics packages
science-tasks (1.7)
Debian Science tasks for tasksel
science-typesetting (1.7)
Debian Science typesetting packages
science-viewing (1.7)
Debian Science data visualisation packages
science-viewing-dev (1.7)
Debian Science development of visualisation applications
scram (0.16.2-1)
Probabilistic Risk Analysis Tool
scram-gui (0.16.2-1)
SCRAM GUI front-end
scrm (1.7.2-2)
simulator of evolution of genetic sequences
sctk (2.4.10-20151007-1312Z+dfsg2-3)
speech recognition scoring toolkit
scythe (0.994-4)
Bayesian adaptor trimmer for sequencing reads
sdrangelove (0.0.1.20150707-2+b5)
Osmocom Software Defined Radio
seaview (1:4.7-1)
Multiplatform interface for sequence alignment and phylogeny
seer (1.1.4-1+b1)
genomic sequence element (kmer) enrichment analysis
segyio-bin (1.6.0-1+b1)
SEG-Y read/write library for seismic processing (shell utilities)
seq-gen (1.3.4-1) [non-free]
simulate the evolution of nucleotide or amino acid sequences
seqan-apps (2.4.0+dfsg-8)
C++ library for the analysis of biological sequences
seqmagick (0.7.0-1)
imagemagick-like frontend to Biopython SeqIO
seqprep (1.3.2-3)
stripping adaptors and/or merging paired reads of DNA sequences with overlap
seqprep-data (1.3.2-3)
example data set for seqprep - only used for testing
seqsero (1.0-2)
Salmonella serotyping from genome sequencing data
seqtk (1.2-2)
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sextractor (2.19.5+dfsg-6)
Source extractor for astronomical images
sga (0.10.15-3+b2 [mips64el], 0.10.15-3+b1 [amd64, arm64, ppc64el])
de novo genome assembler that uses string graphs
shelxle (1.0.912-1)
graphical user interface for SHELXL
shogun-cmdline-static (3.2.0-7.5)
Large Scale Machine Learning Toolbox
sibsim4 (0.20-3)
align expressed RNA sequences on a DNA template
sickle (1.33-2)
windowed adaptive trimming tool for FASTQ files using quality
sift (4.0.3b-6) [non-free]
predicts if a substitution in a protein has a phenotypic effect
sigma-align (1.1.3-5)
Simple greedy multiple alignment of non-coding DNA sequences
sigviewer (0.5.1+svn556-5)
GUI viewer for biosignals such as EEG, EMG, and ECG
silx (0.7.0+dfsg-2)
Toolbox for X-Ray data analysis - Executables
sim4 (0.0.20121010-4)
tool for aligning cDNA and genomic DNA
sim4db (0~20150903+r2013-3)
batch spliced alignment of cDNA sequences to a target genome
simgrid-java (3.18+dfsg-1)
Java bindings for the SimGrid Toolkit
siril (0.9.9-1)
astronomical image processing tool
skycat (3.1.2+starlink1~b+dfsg-5)
Image visualization and access to catalogs and data for astronomy
slang-xfig (0.2.0~.117-2)
produce plots and drawings through Xfig's fig2dev in S-Lang
sleepyhead (1.0.0-beta-2+dfsg-5)
Sleep tracking software with a focus on monitoring CPAP treatment
smalr (1.1+dfsg-1)
interrogation of the methylation status of nucleotide sequencing reads
smalt (0.7.6-7)
Sequence Mapping and Alignment Tool
smalt-examples (0.7.6-7)
Sequence Mapping and Alignment Tool (examples)
smithwaterman (0.0+git20160702.2610e25-4)
determine similar regions between two strings or genomic sequences
snap (2013-11-29-9)
location of genes from DNA sequence with hidden markov model
snap-aligner (1.0~beta.18+dfsg-2)
Scalable Nucleotide Alignment Program
snaphu (1.4.2-4) [non-free]
Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping
sniffles (1.0.8+ds-2)
structural variation caller using third-generation sequencing
snp-sites (2.4.0-1)
Binary code for the package snp-sites
snpomatic (1.0-4)
fast, stringent short-read mapping software
soapaligner (2.20-1)
aligner of short reads of next generation sequencers
soapdenovo (1.05-5)
short-read assembly method to build de novo draft assembly
soapdenovo2 (241+dfsg-3)
short-read assembly method to build de novo draft assembly
soapsnp (1.03-1)
resequencing utility that can assemble consensus sequence of genomes
solvate (1.0-2) [non-free]
arranges water molecules around protein structures
solvate-doc (1.0-2) [non-free]
Documentation for solvate
sortmerna (2.1-2)
tool for filtering, mapping and OTU-picking NGS reads
spaced (1.2.0-201605+dfsg-1)
alignment-free sequence comparison using spaced words
spades (3.11.1+dfsg-2)
genome assembler for single-cell and isolates data sets
spatialite-bin (4.3.0-2+b4)
Geospatial extension for SQLite - tools
spd (1.3.0-1+b4 [mips64el], 1.3.0-1+b3 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Synchrotron image corrections and azimuthal integration
splash (2.8.0-1)
Visualisation tool for Smoothed Particle Hydrodynamics simulation
sprai (0.9.9.23+dfsg-1)
single-pass sequencing read accuracy improver
spread-phy (1.0.7+dfsg-2)
analyze and visualize phylogeographic reconstructions
squizz (0.99d+dfsg-1)
Converter for genetic sequences and alignments
sra-toolkit (2.8.2-5+dfsg-1)
utilities for the NCBI Sequence Read Archive
srst2 (0.2.0-5)
Short Read Sequence Typing for Bacterial Pathogens
ssake (4.0-1)
genomics application for assembling millions of very short DNA sequences
ssake-examples (4.0-1)
example data for SSAKE, a genomic assembler of short reads
sspace (2.1.1+dfsg-3)
scaffolding pre-assembled contigs after extension
ssw-align (1.1-2)
Smith-Waterman aligner based on libssw
stacks (2.0Beta9+dfsg-1)
pipeline for building loci from short-read DNA sequences
stacks-web (2.0Beta9+dfsg-1)
web interface for displaying loci from short-read sequences
staden (2.0.0+b11-2+b2)
DNA sequence assembly (Gap4/Gap5), editing and analysis tools
staden-common (2.0.0+b11-2)
Architecture independent files for Staden
staden-io-lib-examples (1.14.9-4)
programs for maniuplating DNA sequencing files (usage examples)
staden-io-lib-utils (1.14.9-4)
programs for maniuplating DNA sequencing files
stardata-common (0.8+b1)
Common framework to manage astronomy packages
starplot (0.95.5-8.3)
3-dimensional perspective star map viewer
starpu-examples (1.2.4+dfsg-1+b1 [amd64], 1.2.4+dfsg-1 [arm64, armel, armhf, i386, mips, mips64el, mipsel, ppc64el, s390x])
Task scheduler for heterogeneous multicore machines - exs
stellarium (0.18.1-1)
real-time photo-realistic sky generator
stellarium-data (0.18.1-1)
Stellarium data files
step (4:17.08.3-1)
interactive physical simulator for KDE
stiff (2.4.0-2+b1)
convert scientific FITS images to the TIFF format
stimfit (0.15.8-1)
Program for viewing and analyzing electrophysiological data
subread (1.6.2+dfsg-1)
toolkit for processing next-gen sequencing data
subread-data (1.6.2+dfsg-1)
data files for subread package
suitename (0.3.070628-2)
categorize each suite in an RNA backbone
sumaclust (1.0.31-1)
fast and exact clustering of genomic sequences
sumatra (1.0.31-1)
fast and exact comparison and clustering of sequences
sumo (0.32.0+dfsg1-1+b2)
Simulation of Urban MObility (SUMO)
surankco (0.0.r5+dfsg-2)
Supervised Ranking of Contigs in de novo Assemblies
survex (1.2.35-1)
cave surveying and mapping software
survex-aven (1.2.35-1)
sophisticated cave survey viewer for Survex
swarm (2.2.2+dfsg-2)
robust and fast clustering method for amplicon-based studies
swarp (2.38.0+dfsg-3+b1)
Resample and co-add together FITS images
swarp
virtual package provided by suckless-tools
swe-basic-data (1.80.00.0002-1)
basic data files for the libswe package
swe-standard-data (00004-1)
standard data for the Swiss Ephemeris
sweed (3.2.1+dfsg-1)
assessment of SNPs for their evolutionary advantage
synphot-data (0.9.12+dfsg-1) [contrib]
Optional data files for pysynphot
t-coffee (11.00.8cbe486-6+b1 [mips64el], 11.00.8cbe486-6 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Multiple Sequence Alignment
t-coffee-examples (11.00.8cbe486-6)
annotated examples for the use of T-Coffee
tabix (1.7-2)
generic indexer for TAB-delimited genome position files
tandem-mass (1:20170201.1-1+b1 [mips64el], 1:20170201.1-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
mass spectrometry software for protein identification
tantan (13-5)
low complexity and tandem repeat masker for biosequences
tcliis (7.6+repack-3)
Tcl IIS protocol package
terraintool (1.13-2)
Generates survex format terrain models from SRTM and ASTER data
therion (5.4.1ds1-2)
Cave surveying - 2D and 3D drawing software
therion-viewer (5.4.1ds1-2)
Cave surveying - 3D viewer for therion models
theseus (3.3.0-6+b1 [mips64el], 3.3.0-6 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
superimpose macromolecules using maximum likelihood
theseus-examples (3.3.0-6)
superimpose macromolecules using maximum likelihood (examples)
tigr-glimmer (3.02b-2)
Gene detection in archea and bacteria
timbl (6.4.8-1+b1)
Tilburg Memory Based Learner
timblserver (1.11-1+b1)
Server extensions for Timbl
tksao (7.6+repack-3)
Tk widgets for astronomical imaging and data visualization
tm-align (20170708+dfsg-1)
structural alignment of proteins
tnseq-transit (2.1.2-1)
statistical calculations of essentiality of genes or genomic regions
tophat (2.1.1+dfsg1-1)
fast splice junction mapper for RNA-Seq reads
toppred (1.10-6)
transmembrane topology prediction
transcalc (0.14-6)
microwave and RF transmission line calculator
transdecoder (5.0.1-1)
find coding regions within RNA transcript sequences
transrate-tools (1.0.0-2)
helper for transrate
transtermhp (2.09-4)
find rho-independent transcription terminators in bacterial genomes
travis (170812-1)
trajectory analyzer and visualizer
tree-ppuzzle (5.2-10+b1)
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-10+b1)
Reconstruction of phylogenetic trees by maximum likelihood
treeview (1.1.6.4+dfsg1-3)
Java re-implementation of Michael Eisen's TreeView
treeviewx (0.5.1+20100823-5)
Displays and prints phylogenetic trees
triangle-bin (1.6-2) [non-free]
High-quality 2-D mesh generator binary programs
trimmomatic (0.38+dfsg-1)
flexible read trimming tool for Illumina NGS data
trinityrnaseq (2.5.1+dfsg-2)
RNA-Seq De novo Assembly
trinityrnaseq-examples (2.5.1+dfsg-2)
RNA-Seq De novo Assembly common example and testing files
trnascan-se (2.0.0-1) [non-free]
detection of transfer RNA genes in genomic sequence
trnascan-se-common (2.0.0-1) [non-free]
detection of transfer RNA genes in genomic sequence (common files)
tunnelx (20170928-2)
Cave Survey drawing software
uc-echo (1.12-10)
error correction algorithm designed for short-reads from NGS
ucto (0.9.6-1+b1)
Unicode Tokenizer
uctodata (0.4-1)
Data files for Ucto
uhd-host (3.12.0.0-3)
universal hardware driver for Ettus Research products - host apps
units-filter (3.9-1)
Parser for expressions concerning physical values
varna (3-93+ds-2)
Visualization Applet for RNA
varscan (2.4.3+dfsg-1) [non-free]
variant detection in next-generation sequencing data
vcftools (0.1.15-1)
Collection of tools to work with VCF files
velvet (1.2.10+dfsg1-5)
Nucleic acid sequence assembler for very short reads
velvet-example (1.2.10+dfsg1-5)
Example data for the Velvet sequence assembler
velvet-long (1.2.10+dfsg1-5)
Nucleic acid sequence assembler for very short reads, long version
velvet-tests (1.2.10+dfsg1-5)
Test data for the Velvet sequence assembler
velvetoptimiser (2.2.6-2)
automatically optimise Velvet do novo assembly parameters
veusz (1.21.1-1.3)
2D scientific plotting application with graphical interface
veusz-helpers (1.21.1-1.3)
Architecture-specific helper module for Veusz
viewmol (2.4.1-24+b1)
graphical front end for computational chemistry programs
visp-images-data (3.1.0-1)
visual servoing library - dataset reference files
vistrails (2.2.4-1)
Science visualisation workflow toolkit
vmtk (1.3+dfsg-2.2) [non-free]
the Vascular Modeling Toolkit
voro++ (0.4.6+dfsg1-2)
library for the computation of the Voronoi diagram
voro++-examples (0.4.6+dfsg1-2)
library for the computation of the Voronoi diagram (examples)
voronota (1.18.1877-2)
Voronoi diagram-based tool to find atom contacts
votca-csg (1.4.1-1)
VOTCA's coarse-graining engine
votca-csg-scripts (1.4.1-1)
VOTCA's coarse-graining scripts
votca-csg-tutorials (1.4.1-1)
VOTCA's coarse-graining tutorials
voxbo (1.8.5~svn1246-3)
processing, statistical analysis, and display of brain imaging data
vsearch (2.8.0-1)
tool for processing metagenomic sequences
wcslib-tools (5.18-1)
Command line tools utilizing wcslib
wcstools (3.9.5-3)
Handle the WCS of a FITS image
weightwatcher (1.12+dfsg-1)
Combine maps and polygon data for astronomical image processing
weka (3.6.14-1)
Machine learning algorithms for data mining tasks
wfrog (0.8.2+svn973-1)
Web-based customizable weather station software
wigeon (20101212+dfsg1-2)
reimplementation of the Pintail 16S DNA anomaly detection utility
wise (2.4.1-20)
comparison of biopolymers, like DNA and protein sequences
wsclean (2.5-1)
Fast generic widefield interferometric imager
wxastrocapture (1.8.1+git20140821+dfsg-2)
Windows linuX Astronomy Capture
xbs (0-10+b1)
3-d models and movies of molecules
xcas (1.2.3.57+dfsg1-2+b5)
Computer Algebra System - console and graphical calculator
xdrawchem (1:1.10.2.1-1+b1)
Chemical structures and reactions editor
xflr5 (6.09.06-2+b3)
analysis tool for airfoils
xfoil (6.99.dfsg-2+b3 [mips64el], 6.99.dfsg-2+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
program for the design and analysis of subsonic airfoils
xmakemol (5.16-9+b1)
program for visualizing atomic and molecular systems
xmakemol-gl (5.16-9+b1)
program for visualizing atomic and molecular systems (OpenGL)
xmds2 (2.2.3+dfsg-10)
eXtensible Multi-Dimensional Simulator
xpa-tools (2.1.18-4)
Tools for seamless communication between Unix programs
xplot (1.19-9+b2)
simple on-screen x-y column data plotter
xplot-xplot.org (0.90.7.1-3)
fast tool to graph and visualize lots of data
xppaut (6.11b+1.dfsg-1+b2)
Phase Plane Plus Auto: Solves many kinds of equations
xtide-coastline (20020202-1)
coastline data for xtide
xtide-data (20100529-1)
Harmonics data for xtide
xtide-data-nonfree (20100529-1) [non-free]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
xyscan (4.30-1+b2)
data thief for scientists
yade (2018.02b-4)
Platform for discrete element modeling
yagv (0.4~20130422.r5bd15ed+dfsg-4)
yet another G-code viewer
yale (5.0.95-2) [non-free]
stellar data set from the Yale Bright Star Catalog
yorick (2.2.04+dfsg1-9+b1)
interpreted language and scientific graphics
yorick-av (0.0.5-1)
write movies from Yorick in various formats
yorick-cubeview (2.2-2)
3D FITS data viewer specialized in spectro-imaging
yorick-curses (0.1-6+b3 [mips, mipsel], 0.1-6+b2 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, s390x])
interface to the (n)curses library for the Yorick language
yorick-data (2.2.04+dfsg1-9)
interpreted library for the Yorick language
yorick-dev (2.2.04+dfsg1-9+b1)
development files for the Yorick interpreted language
yorick-full (2.2.04+dfsg1-9+b1)
full installation of the Yorick interpreter and add-ons
yorick-gl (1.1+cvs20070922+dfsg-6.1)
OpenGL 3D graphics support for the Yorick language
yorick-gy (0.0.5-1)
GObject introspection and Gtk bindings for Yorick
yorick-gyoto (1.2.0-4+b2)
General relativistic geodesic integration for the Yorick language
yorick-hdf5 (0.8.0-8)
Hierarchical Data Format 5 interface for the Yorick language
yorick-imutil (0.5.7-3)
fast image manipulation routines for the Yorick language
yorick-mira (1.1.0+git20170124.3bd1c3~dfsg1-2)
optical interferometry image reconstruction within Yorick
yorick-ml4 (0.6.0-3)
Matlab file format support for the Yorick language
yorick-mpeg (0.1-3)
MPEG output support for the Yorick language
yorick-mpy-common (2.2.04+dfsg1-9)
Message Passing Yorick (common files)
yorick-mpy-mpich2 (2.2.04+dfsg1-9+b1)
Message Passing Yorick (MPICH2 build)
yorick-mpy-openmpi (2.2.04+dfsg1-9+b1)
Message Passing Yorick (OpenMPI build)
yorick-optimpack (1.3.2+dfsg+1.4.0-1)
optimization of large scale problems for the Yorick language
yorick-soy (1.4.0-3)
sparse matrix operations for the Yorick language
yorick-spydr (0.8.2-3)
FITS image display and simple analysis
yorick-svipc (0.16-2+b4)
interprocess communication (shared memory...) for Yorick
yorick-yao (5.4.0-1)
Yorick-based adaptive optics system simulator
yorick-yeti (6.4.0-1)
utility plugin for the Yorick language
yorick-yeti-fftw (6.4.0-1)
FFT plugin for the Yorick language
yorick-yeti-regex (6.4.0-1)
POSIX regular expressions for the Yorick language
yorick-yeti-tiff (6.4.0-1)
TIFF image format input for the Yorick language
yorick-ygsl (1.2.1-1+b2 [mips64el], 1.2.1-1+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
GSL special functions plugin for the Yorick language
yorick-ynfft (1.0.3-1)
nonequispaced fast Fourier transform for Yorick
yorick-yutils (1.5.2-1)
various utilities for the Yorick language
yorick-z (1.2.0+cvs20080115-5+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x], 1.2.0+cvs20080115-5+b1 [mips64el])
zlib, jpeg and png support for the Yorick language
z3 (4.4.1-0.3+b1)
theorem prover from Microsoft Research
z88 (13.0.0+dfsg2-6)
Finite Element Analysis Program - runtime
z88-data (13.0.0+dfsg2-6)
Finite Element Analysis Program - data
zalign (0.9.1-3+b1)
parallel local alignment of biological sequences
zegrapher (3.0.2-1)
plotting mathematical functions and sequences on the plane
zimpl (3.3.4-2)
mathematical modeling language for optimization problems
ztex-bmp (20120314-2)
universal macro processor