Package: r-bioc-annotationhub (2.14.3+dfsg-1)

[ Source: r-bioc-annotationhub  ]

GNU R client to access AnnotationHub resources

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Other Packages Related to r-bioc-annotationhub

• dep: r-api-3.5

  virtual package provided by r-base-core

• dep: r-api-bioc-3.8

  virtual package provided by r-bioc-biocgenerics

• dep: r-base-core (>= 3.5.2-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-annotationdbi (>= 1.31.19)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biocgenerics (>= 0.15.10)

  generic functions for Bioconductor

• dep: r-bioc-interactivedisplaybase

  base package for enabling powerful shiny web displays of Bioconductor objects

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-biocmanager

  Access the Bioconductor Project Package Repository

• dep: r-cran-curl

  GNU R modern and flexible web client for R

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-rsqlite

  Database Interface R driver for SQLite

• dep: r-cran-yaml

  Methods to convert R data to YAML and back

• rec: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biostrings

  GNU R string objects representing biological sequences

• sug: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• sug: r-bioc-rsamtools

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-summarizedexperiment

  BioConductor assay container

• sug: r-bioc-variantannotation

  BioConductor annotation of genetic variants

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

Download r-bioc-annotationhub

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	339.0 kB	579.0 kB	[list of files]