Package: pbgenomicconsensus (2.3.2-5)

[ Source: pbgenomicconsensus  ]

Pacific Biosciences variant and consensus caller

The GenomicConsensus package provides Quiver, Pacific Biosciences' flagship consensus and variant caller. Quiver is an algorithm that finds the maximum likelihood template sequence given PacBio reads of the template. These reads are modeled using a conditional random field approach that prescribes a probability to a read given a template sequence. In addition to the base sequence of each read, Quiver uses several additional quality value covariates that the base caller provides.

This package is part of the SMRTAnalysis suite

Other Packages Related to pbgenomicconsensus

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: python-pbgenomicconsensus (= 2.3.2-5)

  Pacific Biosciences variant and consensus caller (Python 2)

• dep: python-pkg-resources

  Package Discovery and Resource Access using pkg_resources

• rec: python-consensuscore2

  generate consensus sequences for PacBio data -- Python 2

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