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[ Source: mauve-aligner  ]

Package: mauve-aligner (2.4.0+4736-1)

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multiple genome alignment

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 479.9 kB546.0 kB [list of files]
arm64 479.9 kB546.0 kB [list of files]
armel 479.9 kB546.0 kB [list of files]
armhf 479.9 kB546.0 kB [list of files]
i386 479.9 kB546.0 kB [list of files]
mips 479.9 kB546.0 kB [list of files]
mips64el 479.9 kB546.0 kB [list of files]
mipsel 479.9 kB546.0 kB [list of files]
ppc64el 479.9 kB546.0 kB [list of files]
s390x 479.9 kB546.0 kB [list of files]