all options
stretch-backports  ] [  buster  ] [  sid  ]
[ Source: libseqlib  ]

Package: libseqlib1 (1.1.2+dfsg-3)

Links for libseqlib1

Screenshot

Debian Resources:

Download Source Package libseqlib:

Maintainers:

External Resources:

Similar packages:

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Other Packages Related to libseqlib1

  • depends
  • recommends
  • suggests
  • enhances

Download libseqlib1

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 113.7 kB397.0 kB [list of files]