Package: r-bioc-bitseq (1.26.1+dfsg-1)

[ Source: r-bioc-bitseq  ]

transcript expression inference and analysis for RNA-seq data

The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process. In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments. The second stage of BitSeq embraces the differential expression analysis of transcript expression. Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression.

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• dep: libc6 (>= 2.23)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc1 (>= 1:3.0) [amd64, i386]

  GCC support library

  dep: libgcc1 (>= 1:3.5) [armhf]

  dep: libgcc1 (>= 1:4.2) [arm64]

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

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• dep: r-api-3.5

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• dep: r-api-bioc-3.8

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• dep: r-base-core (>= 3.5.2-1)

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• dep: r-bioc-iranges

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• dep: r-bioc-rsamtools

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• dep: r-bioc-s4vectors

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• dep: r-bioc-zlibbioc

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• dep: zlib1g (>= 1:1.2.3.3)

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