Package: zalign (0.9.1-5)

[ Source: zalign  ]

parallel local alignment of biological sequences

zAlign is a local sequence aligner, especially intended for use with large biological DNA sequences, with more than 1Mbp (Millions of base pairs). It uses the Smith-Waterman exact algorithm with affine gap cost function to perform this task.

zAlign can be used both in distributed (clusters, for example) or standalone environments. Currently it has been tested on Linux and Sun Solaris, using both the MPICH (http://www.mcs.anl.gov/research/projects/mpi/mpich1/) and OpenMPI (http://www.open-mpi.org/) implementations. Ports for other Unix-like environments are highly considered.

Other Packages Related to zalign

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libopenmpi3 (>= 4.0.5)

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 4.9)

  GNU Standard C++ Library v3

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Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	47.9 kB	267.0 kB	[list of files]
arm64	45.1 kB	263.0 kB	[list of files]
armel	25.4 kB	117.0 kB	[list of files]
armhf	25.6 kB	97.0 kB	[list of files]
i386	48.4 kB	261.0 kB	[list of files]
mips64el	50.3 kB	550.0 kB	[list of files]
mipsel	48.9 kB	318.0 kB	[list of files]
ppc64el	50.7 kB	415.0 kB	[list of files]
s390x	46.5 kB	287.0 kB	[list of files]