Package: spoa (4.0.7+ds-1 and others)

[ Source: spoa  ]

SIMD partial order alignment tool

Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to generate consensus sequences (as described in 10.1093/bioinformatics/btg109). It supports three alignment modes: local (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap).

Other Packages Related to spoa

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libspoa7.0.0 (>= 4.0.5+ds) [amd64]

  SIMD partial order alignment library

  dep: libspoa7.0.0 (>= 4.0.7+ds) [not amd64]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download spoa

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	4.0.7+ds-1+b1	37.1 kB	79.0 kB	[list of files]
arm64	4.0.7+ds-1+b1	35.9 kB	75.0 kB	[list of files]
armel	4.0.7+ds-1+b1	34.9 kB	74.0 kB	[list of files]
armhf	4.0.7+ds-1+b1	34.4 kB	62.0 kB	[list of files]
i386	4.0.7+ds-1+b1	37.8 kB	78.0 kB	[list of files]
mips64el	4.0.7+ds-1+b1	36.7 kB	85.0 kB	[list of files]
mipsel	4.0.7+ds-1+b1	36.3 kB	80.0 kB	[list of files]
ppc64el	4.0.7+ds-1+b1	38.0 kB	99.0 kB	[list of files]
s390x	4.0.7+ds-1+b1	36.0 kB	79.0 kB	[list of files]