Package: spaln (2.4.1+dfsg-3)

[ Source: spaln  ]

splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

Other Packages Related to spaln

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• dep: spaln-data

  splicing-aware transcript-alignment to genomic DNA (data)

• dep: zlib1g (>= 1:1.2.0.2)

  compression library - runtime

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amd64	345.1 kB	855.0 kB	[list of files]
arm64	311.5 kB	775.0 kB	[list of files]
armel	296.6 kB	781.0 kB	[list of files]
armhf	303.3 kB	589.0 kB	[list of files]
i386	349.5 kB	881.0 kB	[list of files]
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s390x	349.1 kB	1,003.0 kB	[list of files]