Package: resfinder (3.2-3)

[ Source: resfinder  ]

identify acquired antimicrobial resistance genes

ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.

ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates.

Other Packages Related to resfinder

• dep: ncbi-blast+-legacy

  NCBI Blast legacy call script

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-cgecore

  Python3 module for the Center for Genomic Epidemiology

• dep: python3-distutils

  distutils package for Python 3.x

• dep: python3-tabulate

  pretty-print tabular data in Python3

• dep: resfinder-db

  ResFinder database is a curated database of acquired resistance genes

Download resfinder

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Architecture	Package Size	Installed Size	Files
all	10.6 kB	47.0 kB	[list of files]