Package: miniasm (0.3+dfsg-2)

[ Source: miniasm  ]

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, Role: role::program, science::calculation, Purpose: Calculating, use::comparing, works-with::biological-sequence

Other Packages Related to miniasm

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: minimap

  tool for approximate mapping of long biosequences such as DNA reads

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Architecture	Package Size	Installed Size	Files
amd64	29.6 kB	70.0 kB	[list of files]
arm64	27.8 kB	66.0 kB	[list of files]
armel	28.3 kB	66.0 kB	[list of files]
armhf	26.8 kB	54.0 kB	[list of files]
i386	31.9 kB	74.0 kB	[list of files]
mips64el	30.4 kB	78.0 kB	[list of files]
mipsel	30.0 kB	77.0 kB	[list of files]
ppc64el	32.6 kB	83.0 kB	[list of files]
s390x	28.5 kB	74.0 kB	[list of files]