Package: hyphy-pt (2.5.28+dfsg-3)

[ Source: hyphy  ]

Hypothesis testing using Phylogenies (pthreads version)

HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R. Continued development of HyPhy is currently supported in part by an NIGMS R01 award 1R01GM093939.

This package provides an executable using pthreads to do multiprocessing.

Other Packages Related to hyphy-pt

• dep: hyphy-common (= 2.5.28+dfsg-3)

  Hypothesis testing using Phylogenies (common files)

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libcurl3-gnutls (>= 7.16.2)

  easy-to-use client-side URL transfer library (GnuTLS flavour)

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libsqlite3-0 (>= 3.5.9)

  SQLite 3 shared library

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

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