Package: cat-bat (5.2.2-1)

Links for cat-bat

Debian Resources:

Download Source Package cat-bat:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Andreas Tille (QA Page)
Nilesh Patra (QA Page)

External Resources:

Homepage [github.com]

Similar packages:

taxonomic classification of contigs and metagenome-assembled genomes (MAGs)

Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formatted appropriately.

Other Packages Related to cat-bat

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accelerated BLAST compatible local sequence aligner
dep: prodigal

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dep: python3

interactive high-level object-oriented language (default python3 version)

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amd64	28.8 kB	180.0 kB	[list of files]
arm64	28.8 kB	180.0 kB	[list of files]
ppc64el	28.8 kB	180.0 kB	[list of files]
s390x	28.8 kB	180.0 kB	[list of files]