Package: cassiopee (1.0.9-3 and others)

[ Source: cassiopee  ]

index and search tool in genomic sequences

Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions.

This package contains the cassiopee and cassiopeeknife tools.

Other Packages Related to cassiopee

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: libcassie1v5 (>= 1.0.9)

  library implementating search algorithms

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgoogle-glog0v5

  library that implements application-level logging.

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

Download cassiopee

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.0.9-3+b1	17.6 kB	72.0 kB	[list of files]
arm64	1.0.9-3+b1	16.9 kB	64.0 kB	[list of files]
armel	1.0.9-3+b1	16.3 kB	58.0 kB	[list of files]
armhf	1.0.9-3+b1	16.3 kB	54.0 kB	[list of files]
i386	1.0.9-3+b1	18.2 kB	66.0 kB	[list of files]
mips64el	1.0.9-3+b1	17.6 kB	70.0 kB	[list of files]
mipsel	1.0.9-3+b1	17.3 kB	60.0 kB	[list of files]
ppc64el	1.0.9-3+b1	18.1 kB	156.0 kB	[list of files]
s390x	1.0.9-3+b1	16.9 kB	64.0 kB	[list of files]