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[ Source: samtools  ]

Package: samtools (1.9-5)

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processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 432.3 kB1,009.0 kB [list of files]
arm64 413.7 kB953.0 kB [list of files]
armel 395.5 kB918.0 kB [list of files]
armhf 400.5 kB786.0 kB [list of files]
mips64el 422.5 kB1,078.0 kB [list of files]
mipsel 417.6 kB1,019.0 kB [list of files]
ppc64el 455.1 kB1,481.0 kB [list of files]
s390x 407.6 kB1,021.0 kB [list of files]