Package: pscan-tfbs (1.2.2-4)

[ Source: pscan-tfbs  ]

search for transcription factor binding sites

Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.

Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.

Other Packages Related to pscan-tfbs

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgsl25 (>= 2.6)

  GNU Scientific Library (GSL) -- library package

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [not armel, armhf]

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Architecture	Package Size	Installed Size	Files
amd64	69.9 kB	188.0 kB	[list of files]
arm64	62.9 kB	164.0 kB	[list of files]
armel	60.0 kB	163.0 kB	[list of files]
armhf	59.6 kB	123.0 kB	[list of files]
i386	76.1 kB	203.0 kB	[list of files]
mips64el	67.3 kB	197.0 kB	[list of files]
mipsel	67.5 kB	196.0 kB	[list of files]
ppc64el	71.3 kB	228.0 kB	[list of files]
s390x	64.2 kB	188.0 kB	[list of files]