Package: progressivemauve (1.2.0+4713+dfsg-5 and others)

[ Source: progressivemauve  ]

multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Other Packages Related to progressivemauve

• dep: libboost-filesystem1.74.0 (>= 1.74.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams Library

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  program options library for C++

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [amd64, mips64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libgenome0 (>= 1.3.11+svn20110227.4616)

  toolkit for developing bioinformatic related software

• dep: libmems1 (>= 1.6.0+4725)

  library to support DNA string matching and comparative genomics

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [not armel, armhf]

• enh: mauve-aligner

  multiple genome alignment

Download progressivemauve

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.2.0+4713+dfsg-5+b1	849.1 kB	5,581.0 kB	[list of files]
arm64	1.2.0+4713+dfsg-5+b1	796.5 kB	5,054.0 kB	[list of files]
armel	1.2.0+4713+dfsg-5+b1	651.6 kB	3,950.0 kB	[list of files]
armhf	1.2.0+4713+dfsg-5+b1	646.6 kB	2,990.0 kB	[list of files]
i386	1.2.0+4713+dfsg-5+b1	838.8 kB	5,370.0 kB	[list of files]
mips64el	1.2.0+4713+dfsg-5+b1	811.6 kB	6,117.0 kB	[list of files]
mipsel	1.2.0+4713+dfsg-5+b1	835.7 kB	6,059.0 kB	[list of files]
ppc64el	1.2.0+4713+dfsg-5+b1	886.8 kB	7,375.0 kB	[list of files]
s390x	1.2.0+4713+dfsg-5+b1	736.0 kB	5,594.0 kB	[list of files]