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[ Source: pizzly  ]

Package: pizzly (0.37.3+ds-5)

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Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 287.4 kB876.0 kB [list of files]
arm64 251.7 kB808.0 kB [list of files]
armel 240.5 kB763.0 kB [list of files]
armhf 251.0 kB591.0 kB [list of files]
i386 296.3 kB883.0 kB [list of files]
mips64el 245.9 kB962.0 kB [list of files]
mipsel 250.7 kB940.0 kB [list of files]
ppc64el 282.7 kB988.0 kB [list of files]
s390x 249.6 kB876.0 kB [list of files]