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[ Source: phybin  ]

Package: phybin (0.3-3 and others)

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binning/clustering newick trees by topology

PhyBin is a simple command line tool that classifies a set of Newick tree files by their topology. The purpose of it is to take a large set of tree files and browse through the most common tree topologies.

It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix.

phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies).

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Download phybin

Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 0.3-3 1,534.7 kB11,701.0 kB [list of files]
arm64 0.3-3 1,939.1 kB14,511.0 kB [list of files]
armel 0.3-3+b1 1,767.8 kB11,976.0 kB [list of files]
armhf 0.3-3 1,779.1 kB11,932.0 kB [list of files]
i386 0.3-3 1,562.5 kB9,141.0 kB [list of files]
mips64el 0.3-3 4,823.8 kB52,637.0 kB [list of files]
mipsel 0.3-3 4,343.9 kB41,106.0 kB [list of files]
ppc64el 0.3-3 3,188.7 kB34,936.0 kB [list of files]
s390x 0.3-3 5,518.9 kB49,087.0 kB [list of files]