Package: pbbamtools (1.6.0+dfsg-2)

[ Source: pbbam  ]

processing Pacific Biosciences binary alignment/map files

The BAM format is a binary, compressed, record-oriented container format for raw or aligned sequence reads. The associated SAM format is a text representation of the same data. The specifications for BAM/SAM are maintained by the SAM/BAM Format Specification Working Group.

PacBio-produced BAM files are fully compatible with the BAM specification, but makes use of the extensibility mechanisms of the BAM specification to encode PacBio-specific information.

This package provides command-line utilities for working with PacBio BAM files.

Other Packages Related to pbbamtools

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [mips64el]

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libpbbam1.6.0 (= 1.6.0+dfsg-2)

  Pacific Biosciences binary alignment/map (BAM) library

• dep: libpbcopper1.8.0 (>= 1.8.0+dfsg)

  data structures, algorithms, and utilities for C++ applications

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• rec: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

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Architecture	Package Size	Installed Size	Files
amd64	91.3 kB	354.0 kB	[list of files]
arm64	81.3 kB	310.0 kB	[list of files]
mips64el	86.0 kB	369.0 kB	[list of files]
ppc64el	90.3 kB	554.0 kB	[list of files]