all options
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: libfastahack  ]

Package: libfastahack-dev (1.0.0+dfsg-7)

Links for libfastahack-dev

Screenshot

Debian Resources:

Download Source Package libfastahack:

Maintainers:

External Resources:

Similar packages:

library for indexing and sequence extraction from FASTA files (devel)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This is the development package containing the statically linked library and the header files.

Tags: Software Development: Libraries, Role: Development Library

Other Packages Related to libfastahack-dev

  • depends
  • recommends
  • suggests
  • enhances

Download libfastahack-dev

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 26.4 kB120.0 kB [list of files]
arm64 25.4 kB115.0 kB [list of files]
armel 27.5 kB110.0 kB [list of files]
armhf 27.8 kB98.0 kB [list of files]
i386 29.2 kB105.0 kB [list of files]
mips64el 29.2 kB143.0 kB [list of files]
mipsel 30.1 kB114.0 kB [list of files]
ppc64el 28.0 kB127.0 kB [list of files]
s390x 25.0 kB119.0 kB [list of files]