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[ Source: kleborate  ]

Package: kleborate (2.0.1-1)

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tool to screen Klebsiella genome assemblies

Kleborate is a tool to screen Klebsiella genome assemblies for:

 * MLST sequence type
 * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
 * ICEKp associated virulence loci: yersiniabactin (ybt),
   colibactin (clb)
 * virulence plasmid associated loci: salmochelin (iro), aerobactin
   (iuc), hypermucoidy (rmpA, rmpA2)
 * antimicrobial resistance genes, including quinolone resistance SNPs
   and colistin resistance truncations
 * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
   and Kaptive

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Download kleborate

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 4,970.5 kB36,700.0 kB [list of files]
arm64 4,970.5 kB36,700.0 kB [list of files]
mips64el 5,015.0 kB37,996.0 kB [list of files]
ppc64el 4,986.6 kB39,724.0 kB [list of files]
s390x 4,973.6 kB36,700.0 kB [list of files]