Package: r-bioc-rgsepd (1.22.0-1)

[ Source: r-bioc-rgsepd  ]

GNU R gene set enrichment / projection displays

R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at transcript IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.

Other Packages Related to r-bioc-rgsepd

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.12

  virtual package provided by r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• dep: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• dep: r-bioc-go.db

  annotation maps describing the entire Gene Ontology

• dep: r-bioc-goseq (>= 1.28)

  GNU R gene ontology analyser for RNA-seq and other length biased data

• dep: r-bioc-org.hs.eg.db

  genome-wide annotation for Human

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-gplots

  GNU R package with tools for plotting data by Greg Warnes et al

• dep: r-cran-hash

  GNU R full feature implementation of hash/associated arrays/dictionaries

• sug: r-bioc-biocgenerics

  generic functions for Bioconductor

• sug: r-cran-boot

  GNU R package for bootstrapping functions from Davison and Hinkley

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-xtable

  GNU R coerce data to LaTeX and HTML tables

Download r-bioc-rgsepd

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	1,329.2 kB	1,438.0 kB	[list of files]