Package: abyss (2.2.5+dfsg-1)

[ Source: abyss  ]

de novo, parallel, sequence assembler for short reads

ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread.

Tags: Field: Biology, Implemented in: C, User Interface: Command Line, Role: Program

Other Packages Related to abyss

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libopenmpi3 (>= 4.0.5)

  high performance message passing library -- shared library

• dep: libsqlite3-0 (>= 3.5.9)

  SQLite 3 shared library

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [not armel, armhf]

• dep: make

  utility for directing compilation

• dep: openmpi-bin

  high performance message passing library -- binaries

• dep: openmpi-common

  high performance message passing library -- common files

• dep: perl

  Larry Wall's Practical Extraction and Report Language

Download abyss

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	2,939.3 kB	9,045.0 kB	[list of files]
arm64	2,764.0 kB	8,373.0 kB	[list of files]
armel	2,752.4 kB	8,369.0 kB	[list of files]
armhf	2,798.8 kB	6,741.0 kB	[list of files]
i386	3,029.7 kB	9,589.0 kB	[list of files]
mips64el	2,868.5 kB	10,460.0 kB	[list of files]
mipsel	2,897.2 kB	10,313.0 kB	[list of files]
ppc64el	2,895.8 kB	11,637.0 kB	[list of files]
s390x	2,755.5 kB	9,053.0 kB	[list of files]