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[ Source: r-cran-spp  ]

Package: r-cran-spp (1.16.0-2)

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GNU R ChIP-seq processing pipeline

R package for anlaysis of ChIP-seq and other functional sequencing data

 * Assess overall DNA-binding signals in the data and select appropriate
   quality of tag alignment.
 * Discard or restrict positions with abnormally high number of tags.
 * Calculate genome-wide profiles of smoothed tag density and save them
   in WIG files for viewing in other browsers.
 * Calculate genome-wide profiles providing conservative statistical
   estimates of fold enrichment ratios along the genome. These can be
   exported for browser viewing, or thresholded to determine regions of
   significant enrichment/depletion.
 * Determine statistically significant point binding positions
 * Assess whether the set of point binding positions detected at a
   current sequencing depth meets saturation criteria, and if does not,
   estimate what sequencing depth would be required to do so.

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 315.3 kB453.0 kB [list of files]
arm64 309.7 kB425.0 kB [list of files]
armel 309.8 kB424.0 kB [list of files]
armhf 309.5 kB391.0 kB [list of files]
i386 320.8 kB459.0 kB [list of files]
mips64el 308.7 kB452.0 kB [list of files]
mipsel 308.6 kB454.0 kB [list of files]
ppc64el 317.2 kB497.0 kB [list of files]
s390x 311.0 kB444.0 kB [list of files]