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[ Source: openbabel  ]

Package: openbabel (3.1.1+dfsg-6 and others)

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Chemical toolbox utilities (cli)

Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It allows one to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. Features include:

 * Hydrogen addition and deletion
 * Support for Molecular Mechanics
 * Support for SMARTS molecular matching syntax
 * Automatic feature perception (rings, bonds, hybridization, aromaticity)
 * Flexible atom typer and perception of multiple bonds from atomic coordinates
 * Gasteiger-Marsili partial charge calculation

File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.

This package includes the following utilities:

 * obabel: Convert between various chemical file formats
 * obenergy: Calculate the energy for a molecule
 * obminimize: Optimize the geometry, minimize the energy for a molecule
 * obgrep: Molecular search program using SMARTS pattern
 * obgen: Generate 3D coordinates for a molecule
 * obprop: Print standard molecular properties
 * obfit: Superimpose two molecules based on a pattern
 * obrotamer: Generate conformer/rotamer coordinates
 * obconformer: Generate low-energy conformers
 * obchiral: Print molecular chirality information
 * obrotate: Rotate dihedral angle of molecules in batch mode
 * obprobe: Create electrostatic probe grid

Tags: Field: Chemistry, Implemented in: C++, User Interface: interface::commandline, role::program, Scope: Utility, Purpose: Data Conversion

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Download openbabel

Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 3.1.1+dfsg-6+b2 129.9 kB627.0 kB [list of files]
arm64 3.1.1+dfsg-6+b2 123.0 kB564.0 kB [list of files]
armel 3.1.1+dfsg-6+b2 123.5 kB501.0 kB [list of files]
armhf 3.1.1+dfsg-6+b2 123.8 kB465.0 kB [list of files]
i386 3.1.1+dfsg-6+b2 133.9 kB621.0 kB [list of files]
mips64el 3.1.1+dfsg-6+b2 127.6 kB607.0 kB [list of files]
mipsel 3.1.1+dfsg-6+b2 127.5 kB556.0 kB [list of files]
ppc64el 3.1.1+dfsg-6+b2 130.3 kB1,396.0 kB [list of files]
s390x 3.1.1+dfsg-6+b2 123.5 kB563.0 kB [list of files]