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[ Source: megadepth  ]

Package: megadepth (1.2.0-4)

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computes coverage from BigWig and BAM sequencing files

A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.

This package is a successor of the program 'bamcount'.

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Download megadepth

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 78.3 kB266.0 kB [list of files]
arm64 68.9 kB274.0 kB [list of files]
armel 68.7 kB273.0 kB [list of files]
armhf 69.1 kB209.0 kB [list of files]
i386 81.1 kB273.0 kB [list of files]
mips64el 68.8 kB281.0 kB [list of files]
mipsel 70.7 kB279.0 kB [list of files]
ppc64el 81.5 kB338.0 kB [list of files]
s390x 70.2 kB262.0 kB [list of files]