Package: lighter (1.1.2-7)

[ Source: lighter  ]

fast and memory-efficient sequencing error corrector

Lighter is a fast, memory-efficient tool for correcting sequencing errors. Lighter avoids counting k-mers. Instead, it uses a pair of Bloom filters, one holding a sample of the input k-mers and the other holding k-mers likely to be correct. As long as the sampling fraction is adjusted in inverse proportion to the depth of sequencing, Bloom filter size can be held constant while maintaining near-constant accuracy. Lighter is parallelized, uses no secondary storage, and is both faster and more memory-efficient than competing approaches while achieving comparable accuracy.

Other Packages Related to lighter

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download lighter

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	46.2 kB	124.0 kB	[list of files]
arm64	44.1 kB	116.0 kB	[list of files]
armel	44.0 kB	179.0 kB	[list of files]
armhf	44.1 kB	115.0 kB	[list of files]
i386	51.1 kB	135.0 kB	[list of files]
mips64el	48.8 kB	182.0 kB	[list of files]
mipsel	53.3 kB	181.0 kB	[list of files]
ppc64el	49.7 kB	180.0 kB	[list of files]
s390x	45.8 kB	128.0 kB	[list of files]