Package: libfastahack-dev (1.0.0+dfsg-10)

[ Source: libfastahack  ]

library for indexing and sequence extraction from FASTA files (devel)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This is the development package containing the statically linked library and the header files.

Tags: Software Development: Libraries, Role: Development Library

Other Packages Related to libfastahack-dev

• dep: libfastahack0 (= 1.0.0+dfsg-10)

  library for indexing and sequence extraction from FASTA files (lib)

Download libfastahack-dev

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	26.4 kB	116.0 kB	[list of files]
arm64	25.5 kB	112.0 kB	[list of files]
armel	27.2 kB	104.0 kB	[list of files]
armhf	27.3 kB	92.0 kB	[list of files]
i386	29.3 kB	101.0 kB	[list of files]
mips64el	29.2 kB	140.0 kB	[list of files]
mipsel	29.8 kB	109.0 kB	[list of files]
ppc64el	28.1 kB	124.0 kB	[list of files]
s390x	25.1 kB	114.0 kB	[list of files]