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[ Source: hts-nim-tools  ]

Package: hts-nim-tools (0.2.1-1)

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Similar packages:

tools biological sequences: bam-filter, count-reads, vcf-check

This package provides several tools that (at least at the time of their creation) provide functionalities beyond the routine provided by samtools and other reverse dependencies of the htslib.

These new tools are

 • bam-filter : filter BAM/CRAM/SAM files with a simple expression language
 • count-reads: count BAM/CRAM reads in regions given in a BED file
 • vcf-check  : check regions of a VCF against a background for missing chunks

and yes, as the name suggests, these tools are all implemented in nim, using the nim-hts (upstream: hts-nim) wrapper for the htslib.

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Architecture Package Size Installed Size Files
amd64 198.0 kB864.0 kB [list of files]
arm64 164.6 kB844.0 kB [list of files]
armel 182.9 kB832.0 kB [list of files]
armhf 182.9 kB604.0 kB [list of files]
i386 186.0 kB843.0 kB [list of files]
mips64el 137.8 kB951.0 kB [list of files]
mipsel 141.6 kB934.0 kB [list of files]
ppc64el 158.6 kB916.0 kB [list of files]