Package: r-cran-sctransform (0.3.5-1)

[ Source: r-cran-sctransform  ]

Variance Stabilizing Transformations for Single Cell UMI Data

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

Other Packages Related to r-cran-sctransform

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, ppc64el]

  GCC support library

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  or liblapack.so.3

  virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [not armel, armhf]

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-base-core (>= 4.2.1-2)

  GNU R core of statistical computation and graphics system

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-future

  R package: A Future API for R

• dep: r-cran-future.apply

  apply function to elements in parallel using futures

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-gridextra

  GNU R package with extensions for the grid package

• dep: r-cran-magrittr

  GNU R forward-pipe operator

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: r-cran-matrix (>= 1.5-0)

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-rcpp (>= 0.11.0)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcpparmadillo

  GNU R package for Armadillo C++ linear algebra library

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• rec: r-cran-testthat

  GNU R testsuite

• sug: r-cran-irlba

  GNU R fast truncated SVD, PCA and symmetric eigendecomposition

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

Download r-cran-sctransform

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	479.0 kB	726.0 kB	[list of files]
arm64	467.4 kB	758.0 kB	[list of files]
armel	469.9 kB	756.0 kB	[list of files]
armhf	469.1 kB	692.0 kB	[list of files]
i386	483.2 kB	732.0 kB	[list of files]
mips64el	465.7 kB	769.0 kB	[list of files]
mipsel	468.0 kB	763.0 kB	[list of files]
ppc64el	476.4 kB	823.0 kB	[list of files]
s390x	471.4 kB	730.0 kB	[list of files]