Package: r-bioc-netsam (1.38.0-1)

[ Source: r-bioc-netsam  ]

Network Seriation And Modularization

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.

Other Packages Related to r-bioc-netsam

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-annotationdbi (>= 1.28.0)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biomart (>= 2.18.0)

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• dep: r-bioc-go.db (>= 2.10.0)

  annotation maps describing the entire Gene Ontology

• dep: r-cran-dbi (>= 0.5-1)

  GNU R package providing a generic database interface

• dep: r-cran-doparallel (>= 1.0.10)

  GNU R foreach parallel adaptor for the parallel package

• dep: r-cran-foreach (>= 1.4.0)

  GNU R foreach looping support

• dep: r-cran-igraph (>= 0.6-1)

  GNU R network analysis and visualization

• dep: r-cran-r2html (>= 2.2.0)

  HTML Exportation for R Objects

• dep: r-cran-seriation (>= 1.0-6)

  GNU R infrastructure for ordering objects using seriation

• dep: r-cran-survival (>= 2.37-7)

  GNU R package for survival analysis

• dep: r-cran-wgcna (>= 1.34.0)

  Weighted Correlation Network Analysis

• rec: r-bioc-org.hs.eg.db

  genome-wide annotation for Human

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biocgenerics

  generic functions for Bioconductor

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-markdown

  GNU R package providing R bindings to the Sundown Markdown rendering library

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

Download r-bioc-netsam

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	1,094.4 kB	3,080.0 kB	[list of files]