Package: bwa (0.7.17-7 and others)

[ Source: bwa  ]

Burrows-Wheeler Aligner

BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.

Tags: Biology: Proteins, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, interface::text-mode, role::program, Purpose: Analysing, Comparing

Other Packages Related to bwa

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: perl

  Larry Wall's Practical Extraction and Report Language

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

Download bwa

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	0.7.17-7+b2	207.4 kB	453.0 kB	[list of files]
arm64	0.7.17-7+b2	189.1 kB	449.0 kB	[list of files]
armel	0.7.17-7+b2	190.8 kB	432.0 kB	[list of files]
armhf	0.7.17-7+b2	190.4 kB	320.0 kB	[list of files]
i386	0.7.17-7+b2	231.9 kB	524.0 kB	[list of files]
mips64el	0.7.17-7+b2	201.4 kB	528.0 kB	[list of files]
mipsel	0.7.17-7+b2	231.5 kB	590.0 kB	[list of files]
ppc64el	0.7.17-7+b2	227.0 kB	577.0 kB	[list of files]
s390x	0.7.17-7+b2	190.4 kB	465.0 kB	[list of files]