Package: bio-eagle (2.4.1-3 and others)

[ Source: bio-eagle  ]

Haplotype phasing within a genotyped cohort or using a phased reference panel

Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.

Please note: The executable was renamed to bio-eagle because of a name clash. Please read more about this in /usr/share/doc/bio-eagle/README.Debian.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Purpose: Analysing

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• dep: libboost-program-options1.74.0 (>= 1.74.0)

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• dep: libc6 (>= 2.29)

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• dep: libgcc-s1 (>= 3.0) [amd64]

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  dep: libgcc-s1 (>= 4.2) [i386]

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• sug: bio-eagle-examples

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Download bio-eagle

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Architecture	Version	Package Size	Installed Size	Files
amd64	2.4.1-3+b1	218.8 kB	619.0 kB	[list of files]
i386	2.4.1-3+b1	244.9 kB	674.0 kB	[list of files]