Package: ampliconnoise (1.29-10 and others)

[ Source: ampliconnoise  ]

removal of noise from 454 sequenced PCR amplicons

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

Tags: Role: Program

Other Packages Related to ampliconnoise

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgsl27 (>= 2.7.1)

  GNU Scientific Library (GSL) -- library package

• dep: libopenmpi3 (>= 4.1.4)

  high performance message passing library -- shared library

• dep: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• rec: openmpi-bin

  high performance message passing library -- binaries

Download ampliconnoise

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.29-10+b2	1,085.5 kB	2,041.0 kB	[list of files]
arm64	1.29-10+b2	1,074.0 kB	2,401.0 kB	[list of files]
armel	1.29-10+b2	1,068.5 kB	2,388.0 kB	[list of files]
armhf	1.29-10+b2	1,062.3 kB	2,388.0 kB	[list of files]
i386	1.29-10+b2	1,079.4 kB	2,000.0 kB	[list of files]
mips64el	1.29-10+b2	1,075.7 kB	2,423.0 kB	[list of files]
mipsel	1.29-10+b2	1,075.4 kB	2,410.0 kB	[list of files]
ppc64el	1.29-10+b2	1,097.9 kB	3,105.0 kB	[list of files]
s390x	1.29-10+b2	1,076.4 kB	2,005.0 kB	[list of files]