Пакет: trnascan-se-common (2.0.0-3) [non-free]
Връзки за trnascan-se-common
Ресурси за Debian:
- Доклади за грешки
- Developer Information
- Журнал на промените в Debian
- Авторски права
- Управление на кръпките в Debian
Изтегляне на пакет-източник trnascan-se.
- Начална страница [lowelab.ucsc.edu]
detection of transfer RNA genes in genomic sequence (common files)
tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detection programs are used as fast, first-pass prefilters to identify candidate tRNAs, which are then analyzed by a highly selective tRNA covariance model. This work represents a practical application of RNA covariance models, which are general, probabilistic secondary structure profiles based on stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
This package contains the architecture-independent common files.