Пакет: chromhmm (1.25+dfsg-1)

[ Източник: chromhmm  ]

Chromatin state discovery and characterization

ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser.

Други пакети, свързани с chromhmm

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  или java8-runtime

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  или java11-runtime

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
all	193,3 кБ	209,0 кБ	[списък на файловете]