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[ Източник: bio-eagle  ]

Пакет: bio-eagle (2.4.1-1 и други)

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Haplotype phasing within a genotyped cohort or using a phased reference panel

Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.

Please note: The executable was renamed to bio-eagle because of a name clash. Please read more about this in /usr/share/doc/bio-eagle/README.Debian.

Етикети: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Purpose: Analysing

Други пакети, свързани с bio-eagle

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  • enhances

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Архитектура Версия Големина на пакета Големина след инсталиране Файлове
amd64 2.4.1-1 217,5 кБ625,0 кБ [списък на файловете]
kfreebsd-amd64 2.4.1-1+b1 216,8 кБ618,0 кБ [списък на файловете]