Пакет: python-pbgenomicconsensus (2.3.2-5)

[ Източник: pbgenomicconsensus  ]

Pacific Biosciences variant and consensus caller (Python 2)

The GenomicConsensus package provides Quiver, Pacific Biosciences' flagship consensus and variant caller. Quiver is an algorithm that finds the maximum likelihood template sequence given PacBio reads of the template. These reads are modeled using a conditional random field approach that prescribes a probability to a read given a template sequence. In addition to the base sequence of each read, Quiver uses several additional quality value covariates that the base caller provides.

This package is part of the SMRTAnalysis suite and provides the Python 2 backend library.

Други пакети, свързани с python-pbgenomicconsensus

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: python-h5py

  general-purpose Python interface to hdf5 (Python 2)

• dep: python-numpy

  Numerical Python adds a fast array facility to the Python language

• dep: python-pbcommand

  common command-line interface for Pacific Biosciences analysis modules

• dep: python-pbconsensuscore

  algorithms for PacBio multiple sequence consensus -- Python 2

• dep: python-pbcore

  Python 2 library for processing PacBio data files

• sug: python-consensuscore2

  generate consensus sequences for PacBio data -- Python 2

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