Пакет: pscan-tfbs (1.2.2-4)

[ Източник: pscan-tfbs  ]

search for transcription factor binding sites

Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.

Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.

Други пакети, свързани с pscan-tfbs

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [не armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgsl25 (>= 2.6)

  GNU Scientific Library (GSL) -- library package

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [не armel, armhf]

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amd64	69,9 кБ	188,0 кБ	[списък на файловете]
arm64	62,9 кБ	164,0 кБ	[списък на файловете]
armel	60,0 кБ	163,0 кБ	[списък на файловете]
armhf	59,6 кБ	123,0 кБ	[списък на файловете]
i386	76,1 кБ	203,0 кБ	[списък на файловете]
mips64el	67,3 кБ	197,0 кБ	[списък на файловете]
mipsel	67,5 кБ	196,0 кБ	[списък на файловете]
ppc64el	71,3 кБ	228,0 кБ	[списък на файловете]
s390x	64,2 кБ	188,0 кБ	[списък на файловете]