Пакет: hinge (0.5.0-6 и други)

[ Източник: hinge  ]

long read genome assembler based on hinging

HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.

Други пакети, свързани с hinge

• dep: daligner

  local alignment discovery between long nucleotide sequencing reads

• dep: dascrubber

  alignment-based scrubbing pipeline for DNA sequencing reads

• dep: dazzdb

  manage nucleotide sequencing read data

• dep: libc6 (>= 2.27)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libfmt7 (>= 7.1.3+ds1)

  fast type-safe C++ formatting library -- library

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgomp1 (>= 4.2.1)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-colormap

  ease manipulation of matplotlib colormaps and color codecs (Python 3)

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• dep: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pbcore

  Python 3 library for processing PacBio data files

• dep: python3-ujson

  ultra fast JSON encoder and decoder for Python 3

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Изтегляне на hinge

Изтегляне за всички налични архитектури

Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
amd64	0.5.0-6+b2	431,8 кБ	2 928,0 кБ	[списък на файловете]
arm64	0.5.0-6+b2	392,1 кБ	2 764,0 кБ	[списък на файловете]
armel	0.5.0-6+b2	372,4 кБ	2 659,0 кБ	[списък на файловете]
armhf	0.5.0-6+b2	377,8 кБ	2 123,0 кБ	[списък на файловете]
i386	0.5.0-6+b2	431,7 кБ	3 075,0 кБ	[списък на файловете]
mips64el	0.5.0-6+b2	378,9 кБ	3 233,0 кБ	[списък на файловете]
mipsel	0.5.0-6+b2	383,5 кБ	3 119,0 кБ	[списък на файловете]
ppc64el	0.5.0-6+b2	420,3 кБ	3 444,0 кБ	[списък на файловете]