Пакет: r-bioc-scran (1.18.5+dfsg-1)

[ Източник: r-bioc-scran  ]

BioConductor methods for single-cell RNA-Seq data analysis

Implements functions for low-level analyses of single-cell RNA-seq data. Methods are provided for normalization of cell-specific biases, assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.

Други пакети, свързани с r-bioc-scran

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.0) [не armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  или liblapack.so.3

  виртуален пакет, предлаган от libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: r-api-4.0

  виртуален пакет, предлаган от r-base-core

• dep: r-api-bioc-3.12

  виртуален пакет, предлаган от r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-beachmat

  I/O for several formats storing matrix data

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocneighbors

  Nearest Neighbor Detection for Bioconductor Packages

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biocsingular

  Singular Value Decomposition for Bioconductor Packages

• dep: r-bioc-bluster

  Clustering Algorithms for Bioconductor

• dep: r-bioc-delayedarray

  BioConductor delayed operations on array-like objects

• dep: r-bioc-delayedmatrixstats

  Functions on Rows and Columns of 'DelayedMatrix' Objects

• dep: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• dep: r-bioc-limma

  linear models for microarray data

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-scuttle

  BioConductor single-cell RNA-Seq analysis utilities

• dep: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-bh

  (Virtual) GNU R package to provide BH

• dep: r-cran-dqrng

  GNU R fast pseudo random number generators

• dep: r-cran-igraph

  GNU R network analysis and visualization

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-statmod

  GNU R package providing algorithms and functions for statistical modeling

• rec: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• rec: r-bioc-monocle

  clustering, differential expression, and trajectory analysis for RNA-Seq

• rec: r-cran-dynamictreecut

  Methods for Detection of Clusters in Hierarchical Clustering

• rec: r-cran-testthat

  GNU R testsuite

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-hdf5array

  HDF5 backend for DelayedArray objects

• sug: r-bioc-scater

  Single-Cell Analysis Toolkit for Gene Expression Data in R

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	1 115,4 кБ	1 599,0 кБ	[списък на файловете]
arm64	1 098,6 кБ	1 571,0 кБ	[списък на файловете]
armel	1 096,6 кБ	1 537,0 кБ	[списък на файловете]
armhf	1 096,0 кБ	1 465,0 кБ	[списък на файловете]
i386	1 118,8 кБ	1 609,0 кБ	[списък на файловете]
mips64el	1 096,0 кБ	1 710,0 кБ	[списък на файловете]
mipsel	1 097,8 кБ	1 651,0 кБ	[списък на файловете]
ppc64el	1 114,8 кБ	1 687,0 кБ	[списък на файловете]
s390x	1 105,6 кБ	1 619,0 кБ	[списък на файловете]